Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08260

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,552,368	-	ppx	LU632_RS08255	0.50	+1.3
1,552,387	+	ppx	LU632_RS08255	0.52	-2.1
1,552,416	+	ppx	LU632_RS08255	0.54	-1.5
1,552,444	-	ppx	LU632_RS08255	0.55	+0.9
1,552,598	-	ppx	LU632_RS08255	0.65	-0.7
1,552,730	+	ppx	LU632_RS08255	0.74	+1.3
1,552,788	-	ppx	LU632_RS08255	0.78	-0.8
1,553,021	+				-0.4
1,553,021	+				+0.3
1,553,022	-				+3.3
1,553,112	-				-1.8
1,553,118	+				+0.8
1,553,126	+				+0.6
1,553,127	-				+0.3
1,553,162	-				+0.3
1,553,167	+				-1.0
1,553,168	-				-0.2
1,553,349	-	ppk1	LU632_RS08260	0.10	+1.3
1,553,351	+	ppk1	LU632_RS08260	0.11	-1.2
1,553,352	-	ppk1	LU632_RS08260	0.11	+0.3
1,553,352	-	ppk1	LU632_RS08260	0.11	-1.5
1,553,463	-	ppk1	LU632_RS08260	0.16	-0.2
1,553,522	+	ppk1	LU632_RS08260	0.19	+2.9
1,553,522	+	ppk1	LU632_RS08260	0.19	-0.2
1,553,551	+	ppk1	LU632_RS08260	0.20	-0.2
1,553,551	+	ppk1	LU632_RS08260	0.20	+1.3
1,553,552	-	ppk1	LU632_RS08260	0.20	-0.9
1,553,585	+	ppk1	LU632_RS08260	0.22	-1.0
1,553,585	+	ppk1	LU632_RS08260	0.22	-2.2
1,553,590	-	ppk1	LU632_RS08260	0.22	-1.8
1,553,590	-	ppk1	LU632_RS08260	0.22	+0.2
1,553,656	+	ppk1	LU632_RS08260	0.25	-0.2
1,553,735	+	ppk1	LU632_RS08260	0.29	-1.2
1,553,749	-	ppk1	LU632_RS08260	0.30	-0.7
1,553,788	+	ppk1	LU632_RS08260	0.32	+0.3
1,553,925	-	ppk1	LU632_RS08260	0.38	+1.3
1,554,079	+	ppk1	LU632_RS08260	0.46	-1.5
1,554,161	-	ppk1	LU632_RS08260	0.50	-1.7
1,554,167	-	ppk1	LU632_RS08260	0.50	-2.5
1,554,169	+	ppk1	LU632_RS08260	0.50	+1.3
1,554,169	+	ppk1	LU632_RS08260	0.50	-2.5
1,554,169	+	ppk1	LU632_RS08260	0.50	-1.5
1,554,231	-	ppk1	LU632_RS08260	0.53	+0.4
1,554,231	-	ppk1	LU632_RS08260	0.53	-2.0
1,554,244	-	ppk1	LU632_RS08260	0.54	-1.6
1,554,244	-	ppk1	LU632_RS08260	0.54	+0.3
1,554,341	-	ppk1	LU632_RS08260	0.59	-1.3
1,554,351	-	ppk1	LU632_RS08260	0.59	+0.3
1,554,372	+	ppk1	LU632_RS08260	0.60	-0.7
1,554,526	+	ppk1	LU632_RS08260	0.68	-1.0
1,554,718	-	ppk1	LU632_RS08260	0.77	-0.2
1,554,728	-	ppk1	LU632_RS08260	0.77	-2.2
1,554,728	-	ppk1	LU632_RS08260	0.77	-3.4
1,554,733	+	ppk1	LU632_RS08260	0.78	-1.2
1,554,733	+	ppk1	LU632_RS08260	0.78	-1.7
1,554,734	-	ppk1	LU632_RS08260	0.78	-0.2
1,554,734	-	ppk1	LU632_RS08260	0.78	+1.8
1,554,773	+	ppk1	LU632_RS08260	0.80	-0.7
1,554,774	-	ppk1	LU632_RS08260	0.80	-2.8
1,554,801	+	ppk1	LU632_RS08260	0.81	-0.2
1,554,801	+	ppk1	LU632_RS08260	0.81	-0.6
1,554,802	-	ppk1	LU632_RS08260	0.81	-0.7
1,554,802	-	ppk1	LU632_RS08260	0.81	-1.2
1,554,802	-	ppk1	LU632_RS08260	0.81	-0.2
1,554,813	-	ppk1	LU632_RS08260	0.82	-0.2
1,555,046	-				-3.5
1,555,069	+				-1.0
1,555,174	+				-3.8
1,555,258	+				+1.3
1,555,259	-				+1.0
1,555,259	-				+2.1
1,555,264	-				+0.5
1,555,415	+		LU632_RS08265	0.43	+0.9
1,555,415	+		LU632_RS08265	0.43	+0.1
1,555,417	+		LU632_RS08265	0.45	-1.6
1,555,417	+		LU632_RS08265	0.45	+0.0
1,555,418	-		LU632_RS08265	0.45	-0.6
1,555,418	-		LU632_RS08265	0.45	-3.6
1,555,418	-		LU632_RS08265	0.45	-0.1
1,555,431	-		LU632_RS08265	0.54	+1.3
1,555,543	+				-0.7
1,555,544	-				+0.3
1,555,652	+	purN	LU632_RS08270	0.15	+2.0
1,555,665	+	purN	LU632_RS08270	0.17	+0.2
1,555,714	+	purN	LU632_RS08270	0.24	+1.3
1,555,715	-	purN	LU632_RS08270	0.24	+0.4
1,555,930	+	purN	LU632_RS08270	0.58	+1.3
1,555,930	+	purN	LU632_RS08270	0.58	-1.0
1,555,931	-	purN	LU632_RS08270	0.58	-0.1
1,555,931	-	purN	LU632_RS08270	0.58	-0.1
1,555,933	-	purN	LU632_RS08270	0.59	+0.3
1,555,933	-	purN	LU632_RS08270	0.59	+0.5
1,555,962	+	purN	LU632_RS08270	0.63	-0.5
1,555,962	+	purN	LU632_RS08270	0.63	-0.7
1,555,963	-	purN	LU632_RS08270	0.63	-0.2
1,555,983	-	purN	LU632_RS08270	0.66	+0.3