Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07490 and LU632_RS07495 overlap by 1 nucleotides LU632_RS07495 and LU632_RS07500 are separated by 2 nucleotides LU632_RS07500 and LU632_RS07505 overlap by 8 nucleotides
LU632_RS07490: LU632_RS07490 - tail assembly chaperone, at 1,410,117 to 1,410,725
_RS07490
LU632_RS07495: LU632_RS07495 - phage tail protein, at 1,410,725 to 1,411,639
_RS07495
LU632_RS07500: LU632_RS07500 - phage tail protein I, at 1,411,642 to 1,412,220
_RS07500
LU632_RS07505: LU632_RS07505 - baseplate J/gp47 family protein, at 1,412,213 to 1,413,316
_RS07505
Position (kb) 1411
1412
1413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1410.664 kb on + strand, within LU632_RS07490 at 1410.748 kb on + strand at 1410.749 kb on - strand at 1410.749 kb on - strand at 1410.749 kb on - strand at 1410.749 kb on - strand at 1410.820 kb on + strand, within LU632_RS07495 at 1410.823 kb on + strand, within LU632_RS07495 at 1410.834 kb on + strand, within LU632_RS07495 at 1410.835 kb on - strand, within LU632_RS07495 at 1410.871 kb on + strand, within LU632_RS07495 at 1410.872 kb on - strand, within LU632_RS07495 at 1410.872 kb on - strand, within LU632_RS07495 at 1410.872 kb on - strand, within LU632_RS07495 at 1410.872 kb on - strand, within LU632_RS07495 at 1410.872 kb on - strand, within LU632_RS07495 at 1410.898 kb on + strand, within LU632_RS07495 at 1410.898 kb on + strand, within LU632_RS07495 at 1410.899 kb on - strand, within LU632_RS07495 at 1410.899 kb on - strand, within LU632_RS07495 at 1411.462 kb on + strand, within LU632_RS07495 at 1411.462 kb on + strand, within LU632_RS07495 at 1411.463 kb on - strand, within LU632_RS07495 at 1411.546 kb on + strand, within LU632_RS07495 at 1411.639 kb on + strand at 1411.640 kb on - strand at 1411.643 kb on + strand at 1411.644 kb on - strand at 1411.644 kb on - strand at 1411.644 kb on - strand at 1411.661 kb on + strand at 1411.661 kb on + strand at 1411.661 kb on + strand at 1411.661 kb on + strand at 1411.662 kb on - strand at 1411.662 kb on - strand at 1411.662 kb on - strand at 1411.674 kb on - strand at 1411.712 kb on + strand, within LU632_RS07500 at 1411.768 kb on + strand, within LU632_RS07500 at 1411.768 kb on + strand, within LU632_RS07500 at 1411.862 kb on + strand, within LU632_RS07500 at 1411.862 kb on + strand, within LU632_RS07500 at 1411.863 kb on - strand, within LU632_RS07500 at 1411.863 kb on - strand, within LU632_RS07500 at 1411.863 kb on - strand, within LU632_RS07500 at 1411.999 kb on - strand, within LU632_RS07500 at 1412.109 kb on - strand, within LU632_RS07500 at 1412.255 kb on - strand at 1412.454 kb on + strand, within LU632_RS07505 at 1412.607 kb on + strand, within LU632_RS07505 at 1412.615 kb on + strand, within LU632_RS07505 at 1412.616 kb on - strand, within LU632_RS07505 at 1412.956 kb on + strand, within LU632_RS07505 at 1412.956 kb on + strand, within LU632_RS07505 at 1412.957 kb on - strand, within LU632_RS07505 at 1413.001 kb on + strand, within LU632_RS07505 at 1413.002 kb on - strand, within LU632_RS07505 at 1413.177 kb on + strand, within LU632_RS07505
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 1,410,664 + LU632_RS07490 0.90 -1.4 1,410,748 + -1.5 1,410,749 - +0.4 1,410,749 - +0.0 1,410,749 - +2.0 1,410,749 - +1.3 1,410,820 + LU632_RS07495 0.10 -0.8 1,410,823 + LU632_RS07495 0.11 -2.2 1,410,834 + LU632_RS07495 0.12 -0.6 1,410,835 - LU632_RS07495 0.12 +0.7 1,410,871 + LU632_RS07495 0.16 -0.7 1,410,872 - LU632_RS07495 0.16 +1.0 1,410,872 - LU632_RS07495 0.16 +0.4 1,410,872 - LU632_RS07495 0.16 -2.9 1,410,872 - LU632_RS07495 0.16 -2.2 1,410,872 - LU632_RS07495 0.16 -1.0 1,410,898 + LU632_RS07495 0.19 +0.2 1,410,898 + LU632_RS07495 0.19 +1.0 1,410,899 - LU632_RS07495 0.19 +0.9 1,410,899 - LU632_RS07495 0.19 -2.0 1,411,462 + LU632_RS07495 0.81 +0.2 1,411,462 + LU632_RS07495 0.81 +0.4 1,411,463 - LU632_RS07495 0.81 +0.4 1,411,546 + LU632_RS07495 0.90 -0.2 1,411,639 + +1.6 1,411,640 - -0.1 1,411,643 + -0.3 1,411,644 - -1.0 1,411,644 - +0.6 1,411,644 - +1.0 1,411,661 + +0.8 1,411,661 + +0.5 1,411,661 + -0.6 1,411,661 + -1.8 1,411,662 - +0.1 1,411,662 - +0.4 1,411,662 - -0.1 1,411,674 - -0.2 1,411,712 + LU632_RS07500 0.12 +2.0 1,411,768 + LU632_RS07500 0.22 +0.2 1,411,768 + LU632_RS07500 0.22 -1.9 1,411,862 + LU632_RS07500 0.38 -0.4 1,411,862 + LU632_RS07500 0.38 -1.5 1,411,863 - LU632_RS07500 0.38 +0.9 1,411,863 - LU632_RS07500 0.38 -0.7 1,411,863 - LU632_RS07500 0.38 +1.7 1,411,999 - LU632_RS07500 0.62 +2.3 1,412,109 - LU632_RS07500 0.81 +0.8 1,412,255 - -0.8 1,412,454 + LU632_RS07505 0.22 +1.1 1,412,607 + LU632_RS07505 0.36 -0.1 1,412,615 + LU632_RS07505 0.36 -0.1 1,412,616 - LU632_RS07505 0.37 -0.1 1,412,956 + LU632_RS07505 0.67 +0.5 1,412,956 + LU632_RS07505 0.67 +0.9 1,412,957 - LU632_RS07505 0.67 -1.5 1,413,001 + LU632_RS07505 0.71 +0.4 1,413,002 - LU632_RS07505 0.71 -2.2 1,413,177 + LU632_RS07505 0.87 -0.4
Or see this region's nucleotide sequence