Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07475

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,408,126	-				-0.7
1,408,126	-				-0.2
1,408,127	+				-2.0
1,408,128	-				+1.5
1,408,167	+		LU632_RS07465	0.16	-1.0
1,408,167	+		LU632_RS07465	0.16	-0.3
1,408,176	-		LU632_RS07465	0.19	+0.9
1,408,176	-		LU632_RS07465	0.19	-1.5
1,408,176	-		LU632_RS07465	0.19	-0.4
1,408,176	-		LU632_RS07465	0.19	+0.3
1,408,176	-		LU632_RS07465	0.19	-1.5
1,408,213	-		LU632_RS07465	0.32	-1.5
1,408,214	+		LU632_RS07465	0.32	+4.7
1,408,215	-		LU632_RS07465	0.33	-0.4
1,408,275	+		LU632_RS07465	0.54	-0.1
1,408,276	-		LU632_RS07465	0.54	-2.4
1,408,320	-		LU632_RS07465	0.69	+0.8
1,408,349	+		LU632_RS07465	0.80	+0.6
1,408,350	-		LU632_RS07465	0.80	+0.2
1,408,389	-				-1.8
1,408,399	+				+1.1
1,408,399	+				+1.3
1,408,400	-				-2.0
1,408,400	-				-1.5
1,408,859	+				-0.8
1,408,939	+		LU632_RS07475	0.55	-2.1
1,408,940	-		LU632_RS07475	0.56	+2.3
1,408,949	-		LU632_RS07475	0.62	-0.6
1,408,991	-		LU632_RS07475	0.88	+1.5
1,409,023	+				-0.1
1,409,023	+				+0.4
1,409,024	-				+0.1
1,409,024	-				-0.1
1,409,024	-				+2.4
1,409,057	+				+1.0
1,409,307	-		LU632_RS07480	0.51	-0.6
1,409,319	+		LU632_RS07480	0.53	+0.0
1,409,320	-		LU632_RS07480	0.54	+0.4
1,409,355	+		LU632_RS07480	0.61	+1.4
1,409,416	-		LU632_RS07480	0.73	+2.2
1,409,444	+		LU632_RS07480	0.79	-2.5
1,409,481	-		LU632_RS07480	0.87	+0.4
1,409,510	+				-0.2
1,409,522	+				-1.2
1,409,523	-				+0.9
1,409,523	-				-0.2
1,409,527	-				+1.3
1,409,576	-				-1.6
1,409,606	+		LU632_RS07485	0.10	-1.7
1,409,607	-		LU632_RS07485	0.10	-1.5
1,409,609	-		LU632_RS07485	0.11	+0.6
1,409,613	-		LU632_RS07485	0.11	-0.2
1,409,634	-		LU632_RS07485	0.15	-2.1
1,409,638	-		LU632_RS07485	0.15	+2.6
1,409,655	-		LU632_RS07485	0.18	+0.9
1,409,693	-		LU632_RS07485	0.25	-2.3
1,409,763	-		LU632_RS07485	0.36	-2.0
1,409,763	-		LU632_RS07485	0.36	-1.8
1,409,764	+		LU632_RS07485	0.37	-0.4
1,409,764	+		LU632_RS07485	0.37	+1.1
1,409,764	+		LU632_RS07485	0.37	-0.2
1,409,764	+		LU632_RS07485	0.37	-0.5
1,409,765	-		LU632_RS07485	0.37	+0.3
1,409,765	-		LU632_RS07485	0.37	+2.4
1,409,767	-		LU632_RS07485	0.37	-0.2
1,409,767	-		LU632_RS07485	0.37	+0.2
1,409,790	+		LU632_RS07485	0.41	+2.9
1,409,792	+		LU632_RS07485	0.41	-1.5
1,409,792	+		LU632_RS07485	0.41	-0.0
1,409,793	-		LU632_RS07485	0.41	-0.2
1,409,793	-		LU632_RS07485	0.41	-0.6
1,409,793	-		LU632_RS07485	0.41	+0.7
1,409,794	+		LU632_RS07485	0.42	-3.1
1,409,794	+		LU632_RS07485	0.42	-0.2
1,409,794	+		LU632_RS07485	0.42	+1.2
1,409,794	+		LU632_RS07485	0.42	+0.8
1,409,794	+		LU632_RS07485	0.42	-0.1
1,409,795	-		LU632_RS07485	0.42	+0.1
1,409,795	-		LU632_RS07485	0.42	+0.4
1,409,795	-		LU632_RS07485	0.42	+0.8
1,409,795	-		LU632_RS07485	0.42	-1.3
1,409,795	-		LU632_RS07485	0.42	-0.0
1,409,880	-		LU632_RS07485	0.56	-0.2