Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07375 and LU632_RS07380 are separated by 89 nucleotides LU632_RS07380 and LU632_RS07385 are separated by 282 nucleotides LU632_RS07385 and LU632_RS07390 are separated by 124 nucleotides
LU632_RS07375: LU632_RS07375 - IS91 family transposase, at 1,391,421 to 1,392,644
_RS07375
LU632_RS07380: LU632_RS07380 - DUF2913 family protein, at 1,392,734 to 1,393,072
_RS07380
LU632_RS07385: LU632_RS07385 - recombinase family protein, at 1,393,355 to 1,393,942
_RS07385
LU632_RS07390: LU632_RS07390 - Rpn family recombination-promoting nuclease/putative transposase, at 1,394,067 to 1,395,032
_RS07390
Position (kb) 1392
1393
1394 Strain fitness (log2 ratio) -1
0
1
2
3 at 1392.725 kb on + strand at 1392.725 kb on + strand at 1392.914 kb on + strand, within LU632_RS07380 at 1392.915 kb on - strand, within LU632_RS07380 at 1392.974 kb on + strand, within LU632_RS07380 at 1392.974 kb on + strand, within LU632_RS07380 at 1392.975 kb on - strand, within LU632_RS07380 at 1392.975 kb on - strand, within LU632_RS07380 at 1392.998 kb on - strand, within LU632_RS07380 at 1393.160 kb on + strand at 1393.488 kb on + strand, within LU632_RS07385 at 1393.488 kb on + strand, within LU632_RS07385 at 1393.489 kb on - strand, within LU632_RS07385 at 1393.861 kb on + strand, within LU632_RS07385 at 1394.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 1,392,725 + +2.3 1,392,725 + +0.3 1,392,914 + LU632_RS07380 0.53 +3.2 1,392,915 - LU632_RS07380 0.53 -0.3 1,392,974 + LU632_RS07380 0.71 +1.6 1,392,974 + LU632_RS07380 0.71 -0.7 1,392,975 - LU632_RS07380 0.71 -0.9 1,392,975 - LU632_RS07380 0.71 -0.7 1,392,998 - LU632_RS07380 0.78 -1.0 1,393,160 + -1.3 1,393,488 + LU632_RS07385 0.23 -1.0 1,393,488 + LU632_RS07385 0.23 -0.1 1,393,489 - LU632_RS07385 0.23 -1.2 1,393,861 + LU632_RS07385 0.86 -0.6 1,394,048 - +0.7
Or see this region's nucleotide sequence