Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07370

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,389,352	+		LU632_RS07360	0.17	+0.0
1,389,352	+		LU632_RS07360	0.17	+0.3
1,389,353	-		LU632_RS07360	0.17	+0.2
1,389,353	-		LU632_RS07360	0.17	-1.3
1,389,361	-		LU632_RS07360	0.18	+0.0
1,389,375	+		LU632_RS07360	0.20	+0.9
1,389,375	+		LU632_RS07360	0.20	-0.1
1,389,375	+		LU632_RS07360	0.20	+2.0
1,389,376	-		LU632_RS07360	0.21	-0.6
1,389,475	-		LU632_RS07360	0.36	+0.9
1,389,572	+		LU632_RS07360	0.50	+0.2
1,389,572	+		LU632_RS07360	0.50	+0.6
1,389,573	-		LU632_RS07360	0.51	+0.1
1,389,608	+		LU632_RS07360	0.56	-0.0
1,389,656	-		LU632_RS07360	0.63	-1.8
1,389,687	+		LU632_RS07360	0.68	+1.3
1,389,687	+		LU632_RS07360	0.68	+1.3
1,389,687	+		LU632_RS07360	0.68	-0.0
1,389,687	+		LU632_RS07360	0.68	-0.2
1,389,687	+		LU632_RS07360	0.68	+1.7
1,389,688	-		LU632_RS07360	0.68	-1.0
1,389,688	-		LU632_RS07360	0.68	+0.3
1,389,689	+		LU632_RS07360	0.68	-0.0
1,389,858	-				+0.6
1,389,858	-				-0.9
1,389,858	-				+0.0
1,389,868	-				+2.6
1,389,871	+				-0.5
1,389,872	-				-0.5
1,389,872	-				-1.0
1,389,872	-				-0.3
1,389,872	-				-1.3
1,389,872	-				+0.2
1,389,872	-				+0.4
1,389,873	+				+0.9
1,389,883	-				+0.2
1,389,883	-				-1.8
1,389,883	-				+0.5
1,389,895	+				+0.5
1,389,896	-				-0.4
1,389,951	+		LU632_RS07365	0.25	-1.4
1,389,951	+		LU632_RS07365	0.25	+1.3
1,389,952	-		LU632_RS07365	0.25	+0.9
1,389,962	-		LU632_RS07365	0.29	+0.1
1,389,962	-		LU632_RS07365	0.29	+0.3
1,390,006	+		LU632_RS07365	0.47	-1.3
1,390,068	+		LU632_RS07365	0.71	+0.3
1,390,068	+		LU632_RS07365	0.71	+0.1
1,390,069	-		LU632_RS07365	0.71	+0.3
1,390,069	-		LU632_RS07365	0.71	+0.5
1,390,069	-		LU632_RS07365	0.71	+0.9
1,390,092	+		LU632_RS07365	0.80	-1.5
1,390,093	-		LU632_RS07365	0.81	-2.1
1,390,115	+		LU632_RS07365	0.89	+0.1
1,390,115	+		LU632_RS07365	0.89	-0.1
1,390,151	+				-1.3
1,390,151	+				+0.3
1,390,151	+				-0.3
1,390,152	-				-1.1
1,390,152	-				-1.3
1,390,222	+				-0.2
1,390,250	+				-0.5
1,390,251	-				+1.1
1,390,369	+				+0.0
1,390,370	-				+0.9
1,390,370	-				-1.8
1,390,370	-				+0.1
1,390,370	-				-0.7
1,390,370	-				+0.3
1,390,370	-				+0.2
1,390,388	-		LU632_RS07370	0.12	+0.2
1,390,410	-		LU632_RS07370	0.14	+4.5
1,390,509	+		LU632_RS07370	0.25	-1.0
1,390,509	+		LU632_RS07370	0.25	-1.6
1,390,510	-		LU632_RS07370	0.25	+0.7
1,390,510	-		LU632_RS07370	0.25	-2.5
1,390,651	-		LU632_RS07370	0.40	+0.8
1,390,677	+		LU632_RS07370	0.43	+0.8
1,390,731	+		LU632_RS07370	0.49	-1.8
1,390,731	+		LU632_RS07370	0.49	+1.2
1,390,865	-		LU632_RS07370	0.63	+0.6
1,390,923	+		LU632_RS07370	0.70	+1.1
1,390,923	+		LU632_RS07370	0.70	+0.0
1,390,923	+		LU632_RS07370	0.70	+0.6
1,390,923	+		LU632_RS07370	0.70	-1.7
1,390,923	+		LU632_RS07370	0.70	+0.6
1,390,923	+		LU632_RS07370	0.70	-0.9
1,390,923	+		LU632_RS07370	0.70	-0.4
1,390,923	+		LU632_RS07370	0.70	-0.1