Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07115

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,345,472	-				-1.5
1,345,479	-		LU632_RS07105	0.17	+1.2
1,345,499	+		LU632_RS07105	0.23	+0.2
1,345,499	+		LU632_RS07105	0.23	-1.0
1,345,500	-		LU632_RS07105	0.23	-0.5
1,345,563	-		LU632_RS07105	0.43	-0.5
1,345,613	+		LU632_RS07105	0.59	+0.1
1,345,691	+		LU632_RS07105	0.83	+1.4
1,345,692	-		LU632_RS07105	0.83	-2.0
1,345,695	-		LU632_RS07105	0.84	-0.2
1,345,695	-		LU632_RS07105	0.84	-1.0
1,345,743	+				+0.5
1,345,874	-		LU632_RS07110	0.26	-1.1
1,345,874	-		LU632_RS07110	0.26	-0.6
1,346,006	+		LU632_RS07110	0.53	-0.9
1,346,007	-		LU632_RS07110	0.53	+0.5
1,346,025	+		LU632_RS07110	0.57	+0.2
1,346,025	+		LU632_RS07110	0.57	-2.2
1,346,026	-		LU632_RS07110	0.57	-0.5
1,346,026	-		LU632_RS07110	0.57	+0.6
1,346,026	-		LU632_RS07110	0.57	-0.3
1,346,060	+		LU632_RS07110	0.64	-0.3
1,346,060	+		LU632_RS07110	0.64	+2.4
1,346,061	-		LU632_RS07110	0.65	-1.7
1,346,061	-		LU632_RS07110	0.65	+0.4
1,346,196	+				-1.2
1,346,373	+				+0.1
1,346,574	+				+0.5
1,346,802	-		LU632_RS07115	0.24	+0.3
1,346,833	+		LU632_RS07115	0.26	-1.1
1,346,898	-		LU632_RS07115	0.31	+2.0
1,346,904	+		LU632_RS07115	0.31	+0.7
1,346,904	+		LU632_RS07115	0.31	-0.2
1,346,904	+		LU632_RS07115	0.31	-0.1
1,346,909	+		LU632_RS07115	0.31	+2.4
1,346,910	-		LU632_RS07115	0.31	-2.5
1,347,118	-		LU632_RS07115	0.45	+0.3
1,347,228	+		LU632_RS07115	0.52	-0.1
1,347,228	+		LU632_RS07115	0.52	+1.2
1,347,228	+		LU632_RS07115	0.52	+1.0
1,347,228	+		LU632_RS07115	0.52	+1.9
1,347,229	-		LU632_RS07115	0.52	+2.2
1,347,229	-		LU632_RS07115	0.52	-0.8
1,347,243	+		LU632_RS07115	0.53	-1.5
1,347,243	+		LU632_RS07115	0.53	+2.1
1,347,243	+		LU632_RS07115	0.53	-2.3
1,347,631	-		LU632_RS07115	0.79	+1.1
1,347,752	+		LU632_RS07115	0.87	+0.4
1,347,858	+				-1.2
1,347,858	+				-1.8
1,347,859	-				+1.5
1,347,859	-				-1.5
1,347,859	-				+0.5
1,347,859	-				+0.3
1,347,955	-				-0.0
1,348,103	+				-1.5
1,348,103	+				-1.3
1,348,253	+		LU632_RS07120	0.15	-2.3
1,348,253	+		LU632_RS07120	0.15	+0.1
1,348,254	-		LU632_RS07120	0.15	-0.1
1,348,254	-		LU632_RS07120	0.15	-0.2
1,348,273	+		LU632_RS07120	0.16	+0.0
1,348,273	+		LU632_RS07120	0.16	-0.7
1,348,294	-		LU632_RS07120	0.17	+0.5
1,348,360	-		LU632_RS07120	0.20	-0.6
1,348,460	-		LU632_RS07120	0.25	+1.4
1,348,611	+		LU632_RS07120	0.32	-0.8
1,348,616	-		LU632_RS07120	0.33	+1.8
1,348,629	-		LU632_RS07120	0.33	+0.2
1,348,657	-		LU632_RS07120	0.35	-1.8
1,348,697	+		LU632_RS07120	0.37	-0.3
1,348,700	+		LU632_RS07120	0.37	-1.6
1,348,701	-		LU632_RS07120	0.37	+1.4
1,348,701	-		LU632_RS07120	0.37	-0.1
1,348,790	+		LU632_RS07120	0.41	+1.4
1,348,791	-		LU632_RS07120	0.41	+0.4
1,348,791	-		LU632_RS07120	0.41	-0.5
1,348,791	-		LU632_RS07120	0.41	+0.3
1,348,791	-		LU632_RS07120	0.41	+1.4
1,348,791	-		LU632_RS07120	0.41	+0.4
1,348,792	+		LU632_RS07120	0.41	+0.0
1,348,792	+		LU632_RS07120	0.41	+0.4
1,348,792	+		LU632_RS07120	0.41	-2.6
1,348,908	-		LU632_RS07120	0.47	-0.5
1,348,908	-		LU632_RS07120	0.47	+0.3