Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06935 and LU632_RS06940 overlap by 4 nucleotides LU632_RS06940 and LU632_RS06945 overlap by 4 nucleotides LU632_RS06945 and LU632_RS06950 overlap by 8 nucleotides LU632_RS06950 and LU632_RS06955 overlap by 4 nucleotides
LU632_RS06935: LU632_RS06935 - hypothetical protein, at 1,327,060 to 1,327,782
_RS06935
LU632_RS06940: LU632_RS06940 - class I SAM-dependent methyltransferase, at 1,327,779 to 1,328,258
_RS06940
LU632_RS06945: LU632_RS06945 - hypothetical protein, at 1,328,255 to 1,328,479
_RS06945
LU632_RS06950: LU632_RS06950 - hypothetical protein, at 1,328,472 to 1,329,047
_RS06950
LU632_RS06955: LU632_RS06955 - hypothetical protein, at 1,329,044 to 1,329,625
_RS06955
Position (kb) 1328
1329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1327.259 kb on + strand, within LU632_RS06935 at 1327.276 kb on - strand, within LU632_RS06935 at 1327.276 kb on - strand, within LU632_RS06935 at 1327.277 kb on + strand, within LU632_RS06935 at 1327.277 kb on + strand, within LU632_RS06935 at 1327.277 kb on + strand, within LU632_RS06935 at 1327.277 kb on + strand, within LU632_RS06935 at 1327.278 kb on - strand, within LU632_RS06935 at 1327.278 kb on - strand, within LU632_RS06935 at 1327.371 kb on - strand, within LU632_RS06935 at 1327.371 kb on - strand, within LU632_RS06935 at 1327.414 kb on - strand, within LU632_RS06935 at 1327.449 kb on + strand, within LU632_RS06935 at 1327.452 kb on - strand, within LU632_RS06935 at 1327.515 kb on + strand, within LU632_RS06935 at 1327.515 kb on + strand, within LU632_RS06935 at 1327.516 kb on - strand, within LU632_RS06935 at 1327.518 kb on - strand, within LU632_RS06935 at 1327.518 kb on - strand, within LU632_RS06935 at 1327.518 kb on - strand, within LU632_RS06935 at 1327.680 kb on - strand, within LU632_RS06935 at 1327.705 kb on + strand, within LU632_RS06935 at 1327.705 kb on + strand, within LU632_RS06935 at 1327.706 kb on - strand, within LU632_RS06935 at 1327.741 kb on - strand at 1327.773 kb on + strand at 1327.773 kb on + strand at 1327.872 kb on + strand, within LU632_RS06940 at 1327.872 kb on + strand, within LU632_RS06940 at 1327.872 kb on + strand, within LU632_RS06940 at 1327.872 kb on + strand, within LU632_RS06940 at 1327.888 kb on - strand, within LU632_RS06940 at 1327.907 kb on + strand, within LU632_RS06940 at 1327.908 kb on - strand, within LU632_RS06940 at 1328.153 kb on + strand, within LU632_RS06940 at 1328.153 kb on + strand, within LU632_RS06940 at 1328.153 kb on + strand, within LU632_RS06940 at 1328.154 kb on - strand, within LU632_RS06940 at 1328.178 kb on - strand, within LU632_RS06940 at 1328.298 kb on + strand, within LU632_RS06945 at 1328.357 kb on + strand, within LU632_RS06945 at 1328.418 kb on - strand, within LU632_RS06945 at 1328.759 kb on - strand, within LU632_RS06950 at 1328.885 kb on - strand, within LU632_RS06950 at 1328.911 kb on - strand, within LU632_RS06950 at 1328.960 kb on + strand, within LU632_RS06950 at 1329.109 kb on + strand, within LU632_RS06955 at 1329.233 kb on + strand, within LU632_RS06955 at 1329.343 kb on - strand, within LU632_RS06955
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 1,327,259 + LU632_RS06935 0.28 +0.9 1,327,276 - LU632_RS06935 0.30 -2.9 1,327,276 - LU632_RS06935 0.30 +0.7 1,327,277 + LU632_RS06935 0.30 -1.0 1,327,277 + LU632_RS06935 0.30 -0.2 1,327,277 + LU632_RS06935 0.30 +0.1 1,327,277 + LU632_RS06935 0.30 +1.0 1,327,278 - LU632_RS06935 0.30 +0.1 1,327,278 - LU632_RS06935 0.30 +1.9 1,327,371 - LU632_RS06935 0.43 +0.9 1,327,371 - LU632_RS06935 0.43 -0.8 1,327,414 - LU632_RS06935 0.49 -1.2 1,327,449 + LU632_RS06935 0.54 -1.1 1,327,452 - LU632_RS06935 0.54 -1.0 1,327,515 + LU632_RS06935 0.63 -1.0 1,327,515 + LU632_RS06935 0.63 +1.0 1,327,516 - LU632_RS06935 0.63 +0.6 1,327,518 - LU632_RS06935 0.63 +0.4 1,327,518 - LU632_RS06935 0.63 +0.4 1,327,518 - LU632_RS06935 0.63 +1.1 1,327,680 - LU632_RS06935 0.86 +0.4 1,327,705 + LU632_RS06935 0.89 -0.6 1,327,705 + LU632_RS06935 0.89 +0.2 1,327,706 - LU632_RS06935 0.89 +0.8 1,327,741 - -2.2 1,327,773 + -1.6 1,327,773 + -1.3 1,327,872 + LU632_RS06940 0.19 +3.3 1,327,872 + LU632_RS06940 0.19 -2.3 1,327,872 + LU632_RS06940 0.19 -0.9 1,327,872 + LU632_RS06940 0.19 +1.2 1,327,888 - LU632_RS06940 0.23 +0.4 1,327,907 + LU632_RS06940 0.27 -0.2 1,327,908 - LU632_RS06940 0.27 +2.4 1,328,153 + LU632_RS06940 0.78 +0.8 1,328,153 + LU632_RS06940 0.78 -1.6 1,328,153 + LU632_RS06940 0.78 -0.2 1,328,154 - LU632_RS06940 0.78 -0.6 1,328,178 - LU632_RS06940 0.83 -1.8 1,328,298 + LU632_RS06945 0.19 -1.1 1,328,357 + LU632_RS06945 0.45 -0.8 1,328,418 - LU632_RS06945 0.72 -1.7 1,328,759 - LU632_RS06950 0.50 -0.2 1,328,885 - LU632_RS06950 0.72 +1.4 1,328,911 - LU632_RS06950 0.76 +0.9 1,328,960 + LU632_RS06950 0.85 -0.6 1,329,109 + LU632_RS06955 0.11 +0.4 1,329,233 + LU632_RS06955 0.32 -0.1 1,329,343 - LU632_RS06955 0.51 -0.9
Or see this region's nucleotide sequence