Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06185

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecC and ptrA are separated by 131 nucleotidesptrA and recB overlap by 4 nucleotides LU632_RS06180: recC - exodeoxyribonuclease V subunit gamma, at 1,176,426 to 1,179,794 recC LU632_RS06185: ptrA - pitrilysin, at 1,179,926 to 1,182,814 ptrA LU632_RS06190: recB - exodeoxyribonuclease V subunit beta, at 1,182,811 to 1,186,347 recB Position (kb) 1179 1180 1181 1182 1183Strain fitness (log2 ratio) -1 0 1 2at 1180.762 kb on + strand, within ptrAat 1180.891 kb on + strand, within ptrAat 1181.005 kb on + strand, within ptrAat 1181.505 kb on + strand, within ptrAat 1181.798 kb on + strand, within ptrA

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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1,180,762 + ptrA LU632_RS06185 0.29 +0.4
1,180,891 + ptrA LU632_RS06185 0.33 -0.3
1,181,005 + ptrA LU632_RS06185 0.37 -1.6
1,181,505 + ptrA LU632_RS06185 0.55 +2.6
1,181,798 + ptrA LU632_RS06185 0.65 +1.4

Or see this region's nucleotide sequence