Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05940

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,126,740	+		LU632_RS05930	0.80	+0.7
1,126,741	-		LU632_RS05930	0.80	-1.7
1,126,773	+		LU632_RS05930	0.82	-0.2
1,126,809	+		LU632_RS05930	0.85	-0.1
1,126,821	-		LU632_RS05930	0.86	+0.2
1,126,880	-		LU632_RS05930	0.90	-0.9
1,126,927	-				-1.7
1,126,927	-				+0.3
1,127,015	+				-0.6
1,127,016	-				+2.2
1,127,040	-				-1.6
1,127,043	+				-0.2
1,127,050	+				-1.2
1,127,058	-				+1.6
1,127,180	+				+0.1
1,127,180	+				-1.1
1,127,231	-				-0.4
1,127,377	+		LU632_RS05935	0.34	-1.2
1,127,398	+		LU632_RS05935	0.38	-1.8
1,127,496	-		LU632_RS05935	0.59	+0.0
1,127,496	-		LU632_RS05935	0.59	+2.0
1,127,496	-		LU632_RS05935	0.59	+2.8
1,127,530	+		LU632_RS05935	0.66	+0.8
1,127,582	+		LU632_RS05935	0.77	-0.1
1,127,707	+				-0.0
1,127,708	-				+0.4
1,127,759	-		LU632_RS05940	0.14	+1.4
1,127,759	-		LU632_RS05940	0.14	-1.6
1,127,819	+		LU632_RS05940	0.29	+3.7
1,127,820	-		LU632_RS05940	0.30	-1.5
1,127,826	+		LU632_RS05940	0.31	+0.4
1,127,837	-		LU632_RS05940	0.34	-0.2
1,127,841	-		LU632_RS05940	0.35	+0.5
1,127,978	+		LU632_RS05940	0.70	+1.1
1,127,978	+		LU632_RS05940	0.70	+0.3
1,127,979	-		LU632_RS05940	0.70	+0.9
1,127,986	-		LU632_RS05940	0.72	-0.1
1,128,010	+		LU632_RS05940	0.78	-1.7
1,128,023	-		LU632_RS05940	0.82	+3.6
1,128,074	-				+0.9
1,128,077	+				-1.6
1,128,078	-				-1.8
1,128,119	-				-2.0
1,128,873	-				+2.1
1,128,893	+		LU632_RS05950	0.27	+0.4
1,128,894	-		LU632_RS05950	0.28	+0.4
1,128,936	+		LU632_RS05950	0.66	-0.6
1,128,936	+		LU632_RS05950	0.66	-1.4
1,128,937	-		LU632_RS05950	0.67	-1.2
1,128,957	-		LU632_RS05950	0.85	+0.6