Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05275

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05270 and LU632_RS05275 are separated by 297 nucleotidesLU632_RS05275 and LU632_RS05280 overlap by 38 nucleotidesLU632_RS05280 and LU632_RS05285 are separated by 170 nucleotides LU632_RS05270: LU632_RS05270 - HNH endonuclease, at 1,019,157 to 1,020,296 _RS05270 LU632_RS05275: LU632_RS05275 - ATP-binding protein, at 1,020,594 to 1,021,454 _RS05275 LU632_RS05280: LU632_RS05280 - hypothetical protein, at 1,021,417 to 1,022,037 _RS05280 LU632_RS05285: LU632_RS05285 - TIGR03757 family integrating conjugative element protein, at 1,022,208 to 1,022,612 _RS05285 Position (kb) 1020 1021 1022Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1019.616 kb on - strand, within LU632_RS05270at 1019.743 kb on + strand, within LU632_RS05270at 1019.743 kb on + strand, within LU632_RS05270at 1019.743 kb on + strand, within LU632_RS05270at 1019.743 kb on + strand, within LU632_RS05270at 1019.743 kb on + strand, within LU632_RS05270at 1019.743 kb on + strand, within LU632_RS05270at 1019.743 kb on + strand, within LU632_RS05270at 1019.743 kb on + strand, within LU632_RS05270at 1019.744 kb on - strand, within LU632_RS05270at 1019.744 kb on - strand, within LU632_RS05270at 1019.744 kb on - strand, within LU632_RS05270at 1019.781 kb on - strand, within LU632_RS05270at 1019.781 kb on - strand, within LU632_RS05270at 1019.809 kb on + strand, within LU632_RS05270at 1019.810 kb on - strand, within LU632_RS05270at 1019.898 kb on + strand, within LU632_RS05270at 1019.899 kb on - strand, within LU632_RS05270at 1019.909 kb on + strand, within LU632_RS05270at 1019.910 kb on - strand, within LU632_RS05270at 1019.988 kb on + strand, within LU632_RS05270at 1019.988 kb on + strand, within LU632_RS05270at 1019.989 kb on - strand, within LU632_RS05270at 1019.989 kb on - strand, within LU632_RS05270at 1019.992 kb on + strand, within LU632_RS05270at 1020.019 kb on - strand, within LU632_RS05270at 1020.019 kb on - strand, within LU632_RS05270at 1020.034 kb on - strand, within LU632_RS05270at 1020.034 kb on - strand, within LU632_RS05270at 1020.051 kb on + strand, within LU632_RS05270at 1020.051 kb on + strand, within LU632_RS05270at 1020.052 kb on - strand, within LU632_RS05270at 1020.125 kb on + strand, within LU632_RS05270at 1020.145 kb on + strand, within LU632_RS05270at 1020.193 kb on + strandat 1020.193 kb on + strandat 1020.194 kb on - strandat 1020.194 kb on - strandat 1020.266 kb on + strandat 1020.266 kb on + strandat 1020.267 kb on + strandat 1020.300 kb on - strandat 1020.380 kb on + strandat 1020.381 kb on - strandat 1020.532 kb on + strandat 1020.551 kb on - strandat 1020.551 kb on - strandat 1021.194 kb on + strand, within LU632_RS05275at 1021.195 kb on - strand, within LU632_RS05275at 1021.253 kb on + strand, within LU632_RS05275at 1021.639 kb on + strand, within LU632_RS05280at 1021.639 kb on + strand, within LU632_RS05280at 1021.639 kb on + strand, within LU632_RS05280at 1021.639 kb on + strand, within LU632_RS05280at 1021.640 kb on - strand, within LU632_RS05280at 1021.640 kb on - strand, within LU632_RS05280at 1021.640 kb on - strand, within LU632_RS05280at 1021.640 kb on - strand, within LU632_RS05280at 1021.640 kb on - strand, within LU632_RS05280at 1021.742 kb on - strand, within LU632_RS05280at 1021.746 kb on + strand, within LU632_RS05280at 1021.747 kb on - strand, within LU632_RS05280at 1021.747 kb on - strand, within LU632_RS05280at 1021.786 kb on + strand, within LU632_RS05280at 1021.787 kb on - strand, within LU632_RS05280at 1021.799 kb on - strand, within LU632_RS05280at 1021.824 kb on - strand, within LU632_RS05280at 1022.141 kb on + strandat 1022.141 kb on + strandat 1022.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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1,019,616 - LU632_RS05270 0.40 +0.1
1,019,743 + LU632_RS05270 0.51 +0.3
1,019,743 + LU632_RS05270 0.51 +0.1
1,019,743 + LU632_RS05270 0.51 -1.8
1,019,743 + LU632_RS05270 0.51 -0.7
1,019,743 + LU632_RS05270 0.51 -0.2
1,019,743 + LU632_RS05270 0.51 -0.1
1,019,743 + LU632_RS05270 0.51 +2.0
1,019,743 + LU632_RS05270 0.51 -1.9
1,019,744 - LU632_RS05270 0.51 +0.3
1,019,744 - LU632_RS05270 0.51 +1.5
1,019,744 - LU632_RS05270 0.51 +0.0
1,019,781 - LU632_RS05270 0.55 +0.3
1,019,781 - LU632_RS05270 0.55 +0.5
1,019,809 + LU632_RS05270 0.57 -0.6
1,019,810 - LU632_RS05270 0.57 +2.3
1,019,898 + LU632_RS05270 0.65 -0.8
1,019,899 - LU632_RS05270 0.65 -1.4
1,019,909 + LU632_RS05270 0.66 +2.3
1,019,910 - LU632_RS05270 0.66 -1.3
1,019,988 + LU632_RS05270 0.73 -0.0
1,019,988 + LU632_RS05270 0.73 -0.9
1,019,989 - LU632_RS05270 0.73 +0.7
1,019,989 - LU632_RS05270 0.73 +0.3
1,019,992 + LU632_RS05270 0.73 +1.1
1,020,019 - LU632_RS05270 0.76 +4.4
1,020,019 - LU632_RS05270 0.76 -1.2
1,020,034 - LU632_RS05270 0.77 +0.2
1,020,034 - LU632_RS05270 0.77 +0.5
1,020,051 + LU632_RS05270 0.78 +0.6
1,020,051 + LU632_RS05270 0.78 +0.2
1,020,052 - LU632_RS05270 0.79 -1.9
1,020,125 + LU632_RS05270 0.85 -1.4
1,020,145 + LU632_RS05270 0.87 -1.2
1,020,193 + -0.1
1,020,193 + +0.8
1,020,194 - -1.2
1,020,194 - +2.1
1,020,266 + -1.4
1,020,266 + -0.7
1,020,267 + -1.2
1,020,300 - +0.4
1,020,380 + -0.5
1,020,381 - -0.4
1,020,532 + -0.8
1,020,551 - -0.8
1,020,551 - -0.4
1,021,194 + LU632_RS05275 0.70 -2.2
1,021,195 - LU632_RS05275 0.70 -0.4
1,021,253 + LU632_RS05275 0.77 +1.4
1,021,639 + LU632_RS05280 0.36 -0.1
1,021,639 + LU632_RS05280 0.36 -0.6
1,021,639 + LU632_RS05280 0.36 -1.3
1,021,639 + LU632_RS05280 0.36 +0.5
1,021,640 - LU632_RS05280 0.36 +0.4
1,021,640 - LU632_RS05280 0.36 +1.0
1,021,640 - LU632_RS05280 0.36 -0.2
1,021,640 - LU632_RS05280 0.36 +0.0
1,021,640 - LU632_RS05280 0.36 -1.2
1,021,742 - LU632_RS05280 0.52 -0.2
1,021,746 + LU632_RS05280 0.53 -0.2
1,021,747 - LU632_RS05280 0.53 +0.0
1,021,747 - LU632_RS05280 0.53 -1.8
1,021,786 + LU632_RS05280 0.59 +0.0
1,021,787 - LU632_RS05280 0.60 +0.2
1,021,799 - LU632_RS05280 0.62 -1.4
1,021,824 - LU632_RS05280 0.66 -0.4
1,022,141 + +1.0
1,022,141 + -0.7
1,022,237 - -0.7

Or see this region's nucleotide sequence