Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05180

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,003,268	+		LU632_RS05170	0.43	-0.1
1,003,285	+		LU632_RS05170	0.46	+0.8
1,003,328	-		LU632_RS05170	0.54	-0.4
1,003,331	-		LU632_RS05170	0.55	+0.1
1,003,331	-		LU632_RS05170	0.55	+0.5
1,003,331	-		LU632_RS05170	0.55	-0.6
1,003,355	+		LU632_RS05170	0.59	+0.3
1,003,434	-		LU632_RS05170	0.75	+0.0
1,003,437	+		LU632_RS05170	0.75	-2.1
1,003,437	+		LU632_RS05170	0.75	-0.1
1,003,438	-		LU632_RS05170	0.75	-0.9
1,003,438	-		LU632_RS05170	0.75	-0.8
1,003,466	-		LU632_RS05170	0.81	-0.5
1,003,466	-		LU632_RS05170	0.81	-0.1
1,003,467	+		LU632_RS05170	0.81	+0.2
1,003,467	+		LU632_RS05170	0.81	+1.3
1,003,468	-		LU632_RS05170	0.81	-0.1
1,003,469	+		LU632_RS05170	0.81	+0.4
1,003,470	-		LU632_RS05170	0.82	+0.1
1,003,470	-		LU632_RS05170	0.82	-0.7
1,003,470	-		LU632_RS05170	0.82	-0.4
1,003,470	-		LU632_RS05170	0.82	-0.0
1,003,490	+		LU632_RS05170	0.85	+2.7
1,003,598	-				+0.6
1,003,625	+				-0.6
1,003,626	-				-0.9
1,003,626	-				+0.0
1,003,630	+				+1.7
1,003,631	-				+1.1
1,003,631	-				+2.4
1,003,643	+				+2.2
1,003,644	-				-0.5
1,003,690	+				-0.5
1,003,697	-				+0.3
1,003,702	+				+0.7
1,003,703	-				-0.0
1,003,770	+				-1.6
1,003,770	+				-2.1
1,003,771	-				+0.9
1,003,771	-				-1.5
1,003,841	-				+1.6
1,003,857	+				-0.9
1,004,001	-	tnpA	LU632_RS05175	0.39	-0.9
1,004,005	-	tnpA	LU632_RS05175	0.40	-0.6
1,004,088	+	tnpA	LU632_RS05175	0.71	-0.3
1,004,114	+	tnpA	LU632_RS05175	0.80	-1.1
1,004,114	+	tnpA	LU632_RS05175	0.80	+1.3
1,004,114	+	tnpA	LU632_RS05175	0.80	-0.4
1,004,115	-	tnpA	LU632_RS05175	0.81	-1.3
1,004,138	+	tnpA	LU632_RS05175	0.89	+1.6
1,004,147	+				-1.6
1,004,148	-				-1.4
1,004,196	+		LU632_RS05180	0.15	+1.0
1,004,252	+		LU632_RS05180	0.37	+6.5
1,004,253	-		LU632_RS05180	0.38	+0.3
1,004,327	+		LU632_RS05180	0.67	+0.2
1,004,529	+				+1.3
1,004,764	+		LU632_RS05185	0.21	+0.2
1,004,764	+		LU632_RS05185	0.21	+0.5
1,004,764	+		LU632_RS05185	0.21	-1.3
1,004,767	+		LU632_RS05185	0.22	-1.6
1,004,767	+		LU632_RS05185	0.22	+0.4
1,004,779	+		LU632_RS05185	0.24	+0.4
1,004,783	-		LU632_RS05185	0.25	+0.7
1,004,804	+		LU632_RS05185	0.29	-2.5
1,004,805	-		LU632_RS05185	0.29	-0.5
1,004,805	-		LU632_RS05185	0.29	+0.3
1,004,871	-		LU632_RS05185	0.41	+1.4
1,004,896	+		LU632_RS05185	0.46	-0.9
1,005,023	-		LU632_RS05185	0.70	-2.1
1,005,023	-		LU632_RS05185	0.70	+0.5
1,005,052	+		LU632_RS05185	0.75	+0.2
1,005,053	-		LU632_RS05185	0.75	+0.0
1,005,130	+		LU632_RS05185	0.90	+1.6
1,005,130	+		LU632_RS05185	0.90	-1.3
1,005,130	+		LU632_RS05185	0.90	+0.2
1,005,130	+		LU632_RS05185	0.90	-0.1
1,005,131	-				+0.4
1,005,204	+				-0.1
1,005,206	+				+0.4
1,005,207	-				-1.0