Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05105 and LU632_RS05110 are separated by 15 nucleotides LU632_RS05110 and LU632_RS05115 are separated by 164 nucleotides LU632_RS05115 and LU632_RS05120 overlap by 1 nucleotides LU632_RS05120 and LU632_RS05125 are separated by 38 nucleotides LU632_RS05125 and LU632_RS05130 are separated by 12 nucleotides
LU632_RS05105: LU632_RS05105 - DUF4225 domain-containing protein, at 992,627 to 993,478
_RS05105
LU632_RS05110: LU632_RS05110 - type VI secretion system tube protein Hcp, at 993,494 to 993,958
_RS05110
LU632_RS05115: LU632_RS05115 - hypothetical protein, at 994,123 to 994,470
_RS05115
LU632_RS05120: LU632_RS05120 - TIGR03758 family integrating conjugative element protein, at 994,470 to 994,712
_RS05120
LU632_RS05125: LU632_RS05125 - TIGR03745 family integrating conjugative element membrane protein, at 994,751 to 995,131
_RS05125
LU632_RS05130: LU632_RS05130 - TIGR03750 family conjugal transfer protein, at 995,144 to 995,500
_RS05130
Position (kb) 994
995 Strain fitness (log2 ratio) -2
-1
0
1 at 993.157 kb on - strand, within LU632_RS05105 at 993.252 kb on - strand, within LU632_RS05105 at 993.357 kb on + strand, within LU632_RS05105 at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.462 kb on + strand at 993.462 kb on + strand at 993.466 kb on + strand at 993.467 kb on - strand at 993.467 kb on - strand at 993.467 kb on - strand at 993.502 kb on - strand at 993.502 kb on - strand at 993.504 kb on + strand at 993.504 kb on + strand at 993.505 kb on - strand at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.873 kb on + strand, within LU632_RS05110 at 994.122 kb on + strand at 994.122 kb on + strand at 994.123 kb on - strand at 994.435 kb on + strand, within LU632_RS05115 at 994.435 kb on + strand, within LU632_RS05115 at 994.436 kb on - strand at 994.436 kb on - strand at 994.450 kb on + strand at 994.503 kb on - strand, within LU632_RS05120 at 994.685 kb on + strand, within LU632_RS05120 at 994.716 kb on + strand at 994.716 kb on + strand at 994.717 kb on - strand at 994.750 kb on + strand at 994.751 kb on - strand at 994.769 kb on - strand at 994.978 kb on + strand, within LU632_RS05125 at 995.093 kb on - strand, within LU632_RS05125 at 995.464 kb on + strand, within LU632_RS05130
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 993,157 - LU632_RS05105 0.62 -2.1 993,252 - LU632_RS05105 0.73 -0.4 993,357 + LU632_RS05105 0.86 -0.4 993,432 + -0.5 993,432 + +1.0 993,432 + +0.3 993,432 + -1.0 993,432 + -1.1 993,433 - -0.2 993,433 - -0.9 993,433 - +0.7 993,433 - -0.1 993,462 + -1.0 993,462 + -1.4 993,466 + +0.1 993,467 - +0.2 993,467 - +1.0 993,467 - -0.6 993,502 - +0.6 993,502 - -0.6 993,504 + -1.5 993,504 + -0.5 993,505 - -0.1 993,817 - LU632_RS05110 0.69 -0.3 993,817 - LU632_RS05110 0.69 +1.7 993,817 - LU632_RS05110 0.69 -1.4 993,817 - LU632_RS05110 0.69 -1.0 993,817 - LU632_RS05110 0.69 -0.9 993,817 - LU632_RS05110 0.69 -0.5 993,873 + LU632_RS05110 0.82 -0.6 994,122 + -1.0 994,122 + -0.6 994,123 - -0.4 994,435 + LU632_RS05115 0.90 -0.8 994,435 + LU632_RS05115 0.90 -1.9 994,436 - +0.8 994,436 - -0.2 994,450 + -0.0 994,503 - LU632_RS05120 0.14 -0.5 994,685 + LU632_RS05120 0.88 +0.1 994,716 + -0.1 994,716 + -2.0 994,717 - -0.4 994,750 + -1.8 994,751 - -0.4 994,769 - -0.9 994,978 + LU632_RS05125 0.60 +0.0 995,093 - LU632_RS05125 0.90 -2.0 995,464 + LU632_RS05130 0.90 -0.3
Or see this region's nucleotide sequence