Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05040 and LU632_RS05045 overlap by 4 nucleotides LU632_RS05045 and LU632_RS05050 are separated by 127 nucleotides LU632_RS05050 and LU632_RS05055 are separated by 304 nucleotides LU632_RS05055 and LU632_RS05060 overlap by 4 nucleotides
LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281
_RS05040
LU632_RS05045: LU632_RS05045 - acetyltransferase, at 981,278 to 981,660
_RS05045
LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585
_RS05050
LU632_RS05055: LU632_RS05055 - TIGR03757 family integrating conjugative element protein, at 985,890 to 986,291
_RS05055
LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345
_RS05060
Position (kb) 981
982
983
984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 980.792 kb on + strand, within LU632_RS05040 at 980.823 kb on + strand, within LU632_RS05040 at 980.823 kb on + strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.825 kb on + strand, within LU632_RS05040 at 980.825 kb on + strand, within LU632_RS05040 at 981.051 kb on + strand at 981.051 kb on + strand at 981.052 kb on - strand at 981.052 kb on - strand at 981.053 kb on + strand at 981.054 kb on - strand at 981.054 kb on - strand at 981.080 kb on + strand at 981.081 kb on - strand at 981.118 kb on - strand at 981.183 kb on + strand at 981.183 kb on + strand at 981.184 kb on - strand at 981.184 kb on - strand at 981.189 kb on - strand at 981.525 kb on + strand, within LU632_RS05045 at 981.525 kb on + strand, within LU632_RS05045 at 981.525 kb on + strand, within LU632_RS05045 at 981.526 kb on - strand, within LU632_RS05045 at 981.574 kb on + strand, within LU632_RS05045 at 981.575 kb on - strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.594 kb on + strand, within LU632_RS05045 at 981.594 kb on + strand, within LU632_RS05045 at 981.595 kb on - strand, within LU632_RS05045 at 981.649 kb on - strand at 981.649 kb on - strand at 981.649 kb on - strand at 981.650 kb on + strand at 981.650 kb on + strand at 981.651 kb on - strand at 981.651 kb on - strand at 981.651 kb on - strand at 981.659 kb on - strand at 981.796 kb on - strand at 981.807 kb on + strand at 981.807 kb on + strand at 981.808 kb on - strand at 981.968 kb on - strand at 982.003 kb on + strand at 982.318 kb on + strand, within LU632_RS05050 at 983.099 kb on - strand, within LU632_RS05050 at 983.184 kb on + strand, within LU632_RS05050 at 983.378 kb on + strand, within LU632_RS05050 at 983.639 kb on + strand, within LU632_RS05050 at 983.734 kb on + strand, within LU632_RS05050 at 983.878 kb on - strand, within LU632_RS05050 at 983.983 kb on - strand, within LU632_RS05050 at 984.127 kb on - strand, within LU632_RS05050 at 984.127 kb on - strand, within LU632_RS05050 at 984.341 kb on + strand, within LU632_RS05050 at 984.344 kb on - strand, within LU632_RS05050 at 984.920 kb on - strand, within LU632_RS05050 at 985.046 kb on - strand, within LU632_RS05050 at 985.055 kb on - strand, within LU632_RS05050 at 985.174 kb on + strand, within LU632_RS05050 at 985.291 kb on - strand at 985.504 kb on + strand at 985.546 kb on - strand at 985.546 kb on - strand at 985.574 kb on + strand at 985.575 kb on - strand at 985.684 kb on + strand at 985.705 kb on + strand at 985.705 kb on + strand at 985.706 kb on - strand at 985.707 kb on + strand at 985.729 kb on - strand at 985.729 kb on - strand at 985.729 kb on - strand at 985.740 kb on + strand at 985.741 kb on - strand at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.958 kb on - strand, within LU632_RS05055 at 985.958 kb on - strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.960 kb on - strand, within LU632_RS05055 at 985.962 kb on - strand, within LU632_RS05055 at 986.161 kb on + strand, within LU632_RS05055 at 986.229 kb on + strand, within LU632_RS05055 at 986.230 kb on - strand, within LU632_RS05055 at 986.431 kb on + strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.502 kb on + strand, within LU632_RS05060 at 986.519 kb on - strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 980,792 + LU632_RS05040 0.83 -0.1 980,823 + LU632_RS05040 0.84 -3.6 980,823 + LU632_RS05040 0.84 +1.2 980,824 - LU632_RS05040 0.84 +1.9 980,824 - LU632_RS05040 0.84 -0.6 980,824 - LU632_RS05040 0.84 +2.3 980,825 + LU632_RS05040 0.84 -0.5 980,825 + LU632_RS05040 0.84 +2.2 981,051 + +0.4 981,051 + +0.4 981,052 - -0.1 981,052 - +0.6 981,053 + -0.8 981,054 - -1.6 981,054 - +0.1 981,080 + -0.6 981,081 - -0.3 981,118 - +0.5 981,183 + -0.3 981,183 + -0.2 981,184 - -1.9 981,184 - -1.4 981,189 - -0.6 981,525 + LU632_RS05045 0.64 +1.9 981,525 + LU632_RS05045 0.64 +0.7 981,525 + LU632_RS05045 0.64 -0.4 981,526 - LU632_RS05045 0.65 -0.9 981,574 + LU632_RS05045 0.77 +0.0 981,575 - LU632_RS05045 0.78 +0.2 981,592 + LU632_RS05045 0.82 -0.8 981,592 + LU632_RS05045 0.82 -0.9 981,592 + LU632_RS05045 0.82 +0.5 981,593 - LU632_RS05045 0.82 -0.4 981,593 - LU632_RS05045 0.82 -0.2 981,593 - LU632_RS05045 0.82 -0.1 981,594 + LU632_RS05045 0.83 -1.2 981,594 + LU632_RS05045 0.83 +0.4 981,595 - LU632_RS05045 0.83 -2.9 981,649 - +0.5 981,649 - +0.6 981,649 - +0.2 981,650 + +1.0 981,650 + -1.4 981,651 - +0.1 981,651 - +0.2 981,651 - +2.9 981,659 - +3.4 981,796 - -0.6 981,807 + +0.0 981,807 + -0.3 981,808 - -1.6 981,968 - -0.0 982,003 + -0.7 982,318 + LU632_RS05050 0.14 +0.9 983,099 - LU632_RS05050 0.35 -0.0 983,184 + LU632_RS05050 0.37 -0.6 983,378 + LU632_RS05050 0.42 -2.8 983,639 + LU632_RS05050 0.49 -0.6 983,734 + LU632_RS05050 0.51 +0.3 983,878 - LU632_RS05050 0.55 -1.6 983,983 - LU632_RS05050 0.58 -0.7 984,127 - LU632_RS05050 0.62 +1.8 984,127 - LU632_RS05050 0.62 -0.6 984,341 + LU632_RS05050 0.67 -0.3 984,344 - LU632_RS05050 0.67 +0.6 984,920 - LU632_RS05050 0.82 -0.1 985,046 - LU632_RS05050 0.86 -0.4 985,055 - LU632_RS05050 0.86 -0.9 985,174 + LU632_RS05050 0.89 -1.6 985,291 - +0.1 985,504 + -2.9 985,546 - -0.8 985,546 - +0.8 985,574 + -2.5 985,575 - +3.2 985,684 + -0.4 985,705 + +0.1 985,705 + +0.1 985,706 - +1.2 985,707 + +0.5 985,729 - +0.1 985,729 - +1.9 985,729 - -1.2 985,740 + +0.5 985,741 - -0.4 985,957 + LU632_RS05055 0.17 +0.6 985,957 + LU632_RS05055 0.17 +2.8 985,957 + LU632_RS05055 0.17 -1.1 985,957 + LU632_RS05055 0.17 +2.4 985,958 - LU632_RS05055 0.17 +0.8 985,958 - LU632_RS05055 0.17 -1.9 985,959 + LU632_RS05055 0.17 +0.3 985,959 + LU632_RS05055 0.17 -2.3 985,959 + LU632_RS05055 0.17 -1.1 985,960 - LU632_RS05055 0.17 +1.2 985,962 - LU632_RS05055 0.18 -1.6 986,161 + LU632_RS05055 0.67 +2.6 986,229 + LU632_RS05055 0.84 -0.2 986,230 - LU632_RS05055 0.85 +0.8 986,431 + LU632_RS05060 0.14 -2.0 986,432 - LU632_RS05060 0.14 +1.9 986,432 - LU632_RS05060 0.14 -0.6 986,502 + LU632_RS05060 0.20 +0.8 986,519 - LU632_RS05060 0.22 -1.4 986,543 + LU632_RS05060 0.24 -2.2 986,543 + LU632_RS05060 0.24 -2.2
Or see this region's nucleotide sequence