Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04995 and LU632_RS05000 are separated by 231 nucleotides LU632_RS05000 and LU632_RS05005 overlap by 1 nucleotides LU632_RS05005 and LU632_RS05010 are separated by 30 nucleotides LU632_RS05010 and LU632_RS05015 are separated by 9 nucleotides LU632_RS05015 and LU632_RS05020 overlap by 4 nucleotides
LU632_RS04995: LU632_RS04995 - IS5/IS1182 family transposase, at 974,272 to 974,490
_RS04995
LU632_RS05000: LU632_RS05000 - RAQPRD family integrative conjugative element protein, at 974,722 to 975,063
_RS05000
LU632_RS05005: LU632_RS05005 - TIGR03758 family integrating conjugative element protein, at 975,063 to 975,305
_RS05005
LU632_RS05010: LU632_RS05010 - TIGR03745 family integrating conjugative element membrane protein, at 975,336 to 975,722
_RS05010
LU632_RS05015: LU632_RS05015 - TIGR03750 family conjugal transfer protein, at 975,732 to 976,088
_RS05015
LU632_RS05020: LU632_RS05020 - TIGR03746 family integrating conjugative element protein, at 976,085 to 976,744
_RS05020
Position (kb) 975
976 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 974.344 kb on - strand, within LU632_RS04995 at 974.344 kb on - strand, within LU632_RS04995 at 974.421 kb on + strand, within LU632_RS04995 at 974.514 kb on + strand at 974.532 kb on - strand at 974.532 kb on - strand at 974.532 kb on - strand at 974.542 kb on + strand at 974.569 kb on + strand at 974.570 kb on - strand at 974.574 kb on + strand at 974.575 kb on - strand at 974.575 kb on - strand at 974.575 kb on - strand at 974.626 kb on - strand at 974.721 kb on + strand at 974.722 kb on - strand at 974.750 kb on - strand at 974.752 kb on - strand at 974.752 kb on - strand at 974.752 kb on - strand at 974.963 kb on + strand, within LU632_RS05000 at 975.043 kb on + strand at 975.043 kb on + strand at 975.044 kb on - strand at 975.044 kb on - strand at 975.285 kb on - strand at 975.313 kb on - strand at 975.336 kb on - strand at 975.398 kb on + strand, within LU632_RS05010 at 975.463 kb on + strand, within LU632_RS05010 at 975.464 kb on - strand, within LU632_RS05010 at 975.464 kb on - strand, within LU632_RS05010 at 975.536 kb on + strand, within LU632_RS05010 at 975.550 kb on + strand, within LU632_RS05010 at 975.572 kb on + strand, within LU632_RS05010 at 975.713 kb on + strand at 975.713 kb on + strand at 975.863 kb on + strand, within LU632_RS05015 at 975.863 kb on + strand, within LU632_RS05015 at 975.863 kb on + strand, within LU632_RS05015 at 975.864 kb on - strand, within LU632_RS05015 at 975.904 kb on + strand, within LU632_RS05015 at 975.905 kb on - strand, within LU632_RS05015 at 975.978 kb on + strand, within LU632_RS05015 at 975.979 kb on - strand, within LU632_RS05015 at 975.980 kb on + strand, within LU632_RS05015 at 976.126 kb on + strand at 976.173 kb on + strand, within LU632_RS05020 at 976.236 kb on + strand, within LU632_RS05020 at 976.301 kb on + strand, within LU632_RS05020 at 976.301 kb on + strand, within LU632_RS05020 at 976.302 kb on - strand, within LU632_RS05020 at 976.670 kb on + strand, within LU632_RS05020
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 974,344 - LU632_RS04995 0.33 -0.4 974,344 - LU632_RS04995 0.33 +0.2 974,421 + LU632_RS04995 0.68 +0.8 974,514 + -1.4 974,532 - -1.1 974,532 - -0.3 974,532 - +0.1 974,542 + -0.0 974,569 + -0.0 974,570 - +0.6 974,574 + +0.1 974,575 - -0.6 974,575 - +2.2 974,575 - -0.9 974,626 - +0.9 974,721 + -1.5 974,722 - +0.5 974,750 - +2.2 974,752 - -1.9 974,752 - -0.2 974,752 - -1.7 974,963 + LU632_RS05000 0.70 -0.7 975,043 + -0.9 975,043 + -0.3 975,044 - -1.0 975,044 - +0.2 975,285 - -0.1 975,313 - +0.9 975,336 - +0.2 975,398 + LU632_RS05010 0.16 -0.1 975,463 + LU632_RS05010 0.33 -0.8 975,464 - LU632_RS05010 0.33 +0.3 975,464 - LU632_RS05010 0.33 +1.5 975,536 + LU632_RS05010 0.52 -0.1 975,550 + LU632_RS05010 0.55 -2.2 975,572 + LU632_RS05010 0.61 +5.5 975,713 + +2.0 975,713 + +0.4 975,863 + LU632_RS05015 0.37 +0.8 975,863 + LU632_RS05015 0.37 +0.6 975,863 + LU632_RS05015 0.37 +1.1 975,864 - LU632_RS05015 0.37 +6.2 975,904 + LU632_RS05015 0.48 +0.7 975,905 - LU632_RS05015 0.48 +0.2 975,978 + LU632_RS05015 0.69 -0.2 975,979 - LU632_RS05015 0.69 -0.3 975,980 + LU632_RS05015 0.69 -1.5 976,126 + -0.5 976,173 + LU632_RS05020 0.13 -1.5 976,236 + LU632_RS05020 0.23 -0.1 976,301 + LU632_RS05020 0.33 -0.4 976,301 + LU632_RS05020 0.33 +0.5 976,302 - LU632_RS05020 0.33 -0.1 976,670 + LU632_RS05020 0.89 -1.7
Or see this region's nucleotide sequence