Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04920

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS04915 and LU632_RS04920 are separated by 194 nucleotidesLU632_RS04920 and LU632_RS04925 overlap by 4 nucleotidesLU632_RS04925 and LU632_RS04930 are separated by 6 nucleotides LU632_RS04915: LU632_RS04915 - IS4 family transposase, at 958,299 to 959,621 _RS04915 LU632_RS04920: LU632_RS04920 - PilL N-terminal domain-containing protein, at 959,816 to 960,412 _RS04920 LU632_RS04925: LU632_RS04925 - hypothetical protein, at 960,409 to 961,131 _RS04925 LU632_RS04930: LU632_RS04930 - TIGR03759 family integrating conjugative element protein, at 961,138 to 961,842 _RS04930 Position (kb) 959 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 959.793 kb on - strandat 959.793 kb on - strandat 959.836 kb on + strandat 959.837 kb on - strandat 959.979 kb on - strand, within LU632_RS04920at 960.005 kb on + strand, within LU632_RS04920at 960.070 kb on + strand, within LU632_RS04920at 960.070 kb on + strand, within LU632_RS04920at 960.070 kb on + strand, within LU632_RS04920at 960.076 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.083 kb on - strand, within LU632_RS04920at 960.128 kb on - strand, within LU632_RS04920at 960.492 kb on + strand, within LU632_RS04925at 960.492 kb on + strand, within LU632_RS04925at 960.492 kb on + strand, within LU632_RS04925at 960.524 kb on + strand, within LU632_RS04925at 960.525 kb on - strand, within LU632_RS04925at 960.525 kb on - strand, within LU632_RS04925at 960.529 kb on + strand, within LU632_RS04925at 960.529 kb on + strand, within LU632_RS04925at 960.530 kb on - strand, within LU632_RS04925at 960.530 kb on - strand, within LU632_RS04925at 960.591 kb on + strand, within LU632_RS04925at 960.591 kb on + strand, within LU632_RS04925at 960.591 kb on + strand, within LU632_RS04925at 960.594 kb on + strand, within LU632_RS04925at 961.020 kb on - strand, within LU632_RS04925at 961.119 kb on + strandat 961.137 kb on + strandat 961.203 kb on + strandat 961.204 kb on - strandat 961.204 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
remove
959,793 - +0.9
959,793 - -0.1
959,836 + -0.6
959,837 - -0.4
959,979 - LU632_RS04920 0.27 +1.1
960,005 + LU632_RS04920 0.32 +1.2
960,070 + LU632_RS04920 0.43 +2.0
960,070 + LU632_RS04920 0.43 -0.6
960,070 + LU632_RS04920 0.43 -0.6
960,076 + LU632_RS04920 0.44 -2.9
960,078 + LU632_RS04920 0.44 +0.1
960,078 + LU632_RS04920 0.44 +3.0
960,078 + LU632_RS04920 0.44 +1.2
960,078 + LU632_RS04920 0.44 +3.8
960,078 + LU632_RS04920 0.44 -2.4
960,078 + LU632_RS04920 0.44 +0.7
960,078 + LU632_RS04920 0.44 -1.1
960,078 + LU632_RS04920 0.44 -1.0
960,078 + LU632_RS04920 0.44 -0.1
960,078 + LU632_RS04920 0.44 +1.0
960,078 + LU632_RS04920 0.44 -0.9
960,078 + LU632_RS04920 0.44 -2.2
960,079 - LU632_RS04920 0.44 +0.6
960,079 - LU632_RS04920 0.44 +1.1
960,079 - LU632_RS04920 0.44 -0.9
960,079 - LU632_RS04920 0.44 -2.9
960,079 - LU632_RS04920 0.44 +0.6
960,079 - LU632_RS04920 0.44 -0.4
960,079 - LU632_RS04920 0.44 -0.5
960,079 - LU632_RS04920 0.44 +0.1
960,083 - LU632_RS04920 0.45 -1.3
960,128 - LU632_RS04920 0.52 -0.9
960,492 + LU632_RS04925 0.11 -0.7
960,492 + LU632_RS04925 0.11 +0.0
960,492 + LU632_RS04925 0.11 +1.1
960,524 + LU632_RS04925 0.16 -0.1
960,525 - LU632_RS04925 0.16 -1.6
960,525 - LU632_RS04925 0.16 -0.7
960,529 + LU632_RS04925 0.17 -0.3
960,529 + LU632_RS04925 0.17 +1.0
960,530 - LU632_RS04925 0.17 -2.1
960,530 - LU632_RS04925 0.17 +1.2
960,591 + LU632_RS04925 0.25 -2.5
960,591 + LU632_RS04925 0.25 -0.1
960,591 + LU632_RS04925 0.25 -0.6
960,594 + LU632_RS04925 0.26 -0.4
961,020 - LU632_RS04925 0.85 -2.3
961,119 + +0.4
961,137 + +1.1
961,203 + -1.3
961,204 - +2.9
961,204 - +0.8

Or see this region's nucleotide sequence