Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04785 and LU632_RS04790 overlap by 23 nucleotides LU632_RS04790 and hcp are separated by 1 nucleotides hcp and LU632_RS04800 are separated by 345 nucleotides
LU632_RS04785: LU632_RS04785 - DUF2778 domain-containing protein, at 940,049 to 940,567
_RS04785
LU632_RS04790: LU632_RS04790 - hypothetical protein, at 940,545 to 940,808
_RS04790
LU632_RS04795: hcp - type VI secretion system tube protein Hcp, at 940,810 to 941,301
hcp
LU632_RS04800: LU632_RS04800 - hypothetical protein, at 941,647 to 941,796
_RS04800
Position (kb) 940
941 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 939.847 kb on + strand at 939.941 kb on - strand at 940.031 kb on - strand at 940.049 kb on - strand at 940.056 kb on + strand at 940.057 kb on - strand at 940.088 kb on + strand at 940.107 kb on - strand, within LU632_RS04785 at 940.120 kb on - strand, within LU632_RS04785 at 940.120 kb on - strand, within LU632_RS04785 at 940.144 kb on + strand, within LU632_RS04785 at 940.145 kb on - strand, within LU632_RS04785 at 940.178 kb on - strand, within LU632_RS04785 at 940.328 kb on + strand, within LU632_RS04785 at 940.328 kb on + strand, within LU632_RS04785 at 940.366 kb on - strand, within LU632_RS04785 at 940.366 kb on - strand, within LU632_RS04785 at 940.424 kb on - strand, within LU632_RS04785 at 940.424 kb on - strand, within LU632_RS04785 at 940.426 kb on - strand, within LU632_RS04785 at 940.429 kb on + strand, within LU632_RS04785 at 940.429 kb on + strand, within LU632_RS04785 at 940.460 kb on - strand, within LU632_RS04785 at 940.764 kb on + strand, within LU632_RS04790 at 940.826 kb on - strand at 941.351 kb on + strand at 941.379 kb on - strand at 941.435 kb on - strand at 941.511 kb on - strand at 941.515 kb on - strand at 941.659 kb on - strand at 941.664 kb on - strand, within LU632_RS04800 at 941.669 kb on + strand, within LU632_RS04800 at 941.670 kb on - strand, within LU632_RS04800 at 941.722 kb on + strand, within LU632_RS04800 at 941.799 kb on + strand at 941.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 939,847 + -0.9 939,941 - -1.2 940,031 - +2.0 940,049 - +3.4 940,056 + -0.5 940,057 - +3.8 940,088 + -0.3 940,107 - LU632_RS04785 0.11 -0.3 940,120 - LU632_RS04785 0.14 -1.3 940,120 - LU632_RS04785 0.14 -0.2 940,144 + LU632_RS04785 0.18 -0.3 940,145 - LU632_RS04785 0.18 -0.0 940,178 - LU632_RS04785 0.25 +0.4 940,328 + LU632_RS04785 0.54 +0.3 940,328 + LU632_RS04785 0.54 +0.5 940,366 - LU632_RS04785 0.61 -0.5 940,366 - LU632_RS04785 0.61 +0.5 940,424 - LU632_RS04785 0.72 -0.0 940,424 - LU632_RS04785 0.72 -1.7 940,426 - LU632_RS04785 0.73 +0.0 940,429 + LU632_RS04785 0.73 +1.0 940,429 + LU632_RS04785 0.73 -0.1 940,460 - LU632_RS04785 0.79 -1.3 940,764 + LU632_RS04790 0.83 +1.1 940,826 - +1.2 941,351 + -1.1 941,379 - +0.2 941,435 - +1.0 941,511 - +0.7 941,515 - +0.5 941,659 - -0.1 941,664 - LU632_RS04800 0.11 -0.9 941,669 + LU632_RS04800 0.15 +0.1 941,670 - LU632_RS04800 0.15 -0.5 941,722 + LU632_RS04800 0.50 +1.8 941,799 + +2.0 941,800 - +0.7
Or see this region's nucleotide sequence