Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04610

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04605 and LU632_RS04610 overlap by 4 nucleotidesLU632_RS04610 and LU632_RS04615 are separated by 188 nucleotides LU632_RS04605: LU632_RS04605 - hypothetical protein, at 900,296 to 901,408 _RS04605 LU632_RS04610: LU632_RS04610 - hypothetical protein, at 901,405 to 901,815 _RS04610 LU632_RS04615: LU632_RS04615 - IS3 family transposase, at 902,004 to 903,124 _RS04615 Position (kb) 901 902Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 900.557 kb on - strand, within LU632_RS04605at 900.711 kb on - strand, within LU632_RS04605at 901.009 kb on + strand, within LU632_RS04605at 901.053 kb on - strand, within LU632_RS04605at 901.090 kb on + strand, within LU632_RS04605at 901.150 kb on + strand, within LU632_RS04605at 901.182 kb on + strand, within LU632_RS04605at 901.242 kb on + strand, within LU632_RS04605at 901.242 kb on + strand, within LU632_RS04605at 901.242 kb on + strand, within LU632_RS04605at 901.243 kb on - strand, within LU632_RS04605at 901.243 kb on - strand, within LU632_RS04605at 901.243 kb on - strand, within LU632_RS04605at 901.243 kb on - strand, within LU632_RS04605at 901.243 kb on - strand, within LU632_RS04605at 901.243 kb on - strand, within LU632_RS04605at 901.388 kb on + strandat 901.389 kb on - strandat 901.561 kb on - strand, within LU632_RS04610at 901.642 kb on - strand, within LU632_RS04610at 901.799 kb on + strandat 901.800 kb on - strandat 901.863 kb on + strandat 901.895 kb on + strandat 901.895 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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900,557 - LU632_RS04605 0.23 +0.8
900,711 - LU632_RS04605 0.37 -2.0
901,009 + LU632_RS04605 0.64 -0.9
901,053 - LU632_RS04605 0.68 +0.9
901,090 + LU632_RS04605 0.71 +2.6
901,150 + LU632_RS04605 0.77 +0.6
901,182 + LU632_RS04605 0.80 +3.8
901,242 + LU632_RS04605 0.85 -0.1
901,242 + LU632_RS04605 0.85 +0.6
901,242 + LU632_RS04605 0.85 -1.3
901,243 - LU632_RS04605 0.85 -1.1
901,243 - LU632_RS04605 0.85 -1.0
901,243 - LU632_RS04605 0.85 -0.7
901,243 - LU632_RS04605 0.85 +0.8
901,243 - LU632_RS04605 0.85 +0.2
901,243 - LU632_RS04605 0.85 -1.1
901,388 + +0.0
901,389 - +0.5
901,561 - LU632_RS04610 0.38 +0.4
901,642 - LU632_RS04610 0.58 +1.2
901,799 + -0.8
901,800 - -0.8
901,863 + -0.5
901,895 + +0.2
901,895 + -1.2

Or see this region's nucleotide sequence