Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03555

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03550 and LU632_RS03555 overlap by 4 nucleotidesLU632_RS03555 and LU632_RS03560 overlap by 1 nucleotides LU632_RS03550: LU632_RS03550 - phage portal protein, at 718,077 to 719,099 _RS03550 LU632_RS03555: LU632_RS03555 - terminase family protein, at 719,096 to 719,842 _RS03555 LU632_RS03560: LU632_RS03560 - terminase ATPase subunit family protein, at 719,842 to 721,611 _RS03560 Position (kb) 719 720Strain fitness (log2 ratio) -2 -1 0 1 2at 718.099 kb on + strandat 718.227 kb on - strand, within LU632_RS03550at 718.239 kb on - strand, within LU632_RS03550at 718.247 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.421 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.514 kb on - strand, within LU632_RS03550at 718.516 kb on + strand, within LU632_RS03550at 718.562 kb on + strand, within LU632_RS03550at 718.577 kb on - strand, within LU632_RS03550at 718.591 kb on + strand, within LU632_RS03550at 718.592 kb on - strand, within LU632_RS03550at 718.604 kb on + strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.711 kb on + strand, within LU632_RS03550at 718.712 kb on - strand, within LU632_RS03550at 718.712 kb on - strand, within LU632_RS03550at 718.740 kb on + strand, within LU632_RS03550at 718.789 kb on - strand, within LU632_RS03550at 718.849 kb on + strand, within LU632_RS03550at 718.850 kb on - strand, within LU632_RS03550at 718.850 kb on - strand, within LU632_RS03550at 718.899 kb on + strand, within LU632_RS03550at 718.899 kb on + strand, within LU632_RS03550at 719.270 kb on + strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.351 kb on - strand, within LU632_RS03555at 719.351 kb on - strand, within LU632_RS03555at 719.461 kb on - strand, within LU632_RS03555at 719.592 kb on + strand, within LU632_RS03555at 719.593 kb on - strand, within LU632_RS03555at 719.860 kb on - strandat 719.969 kb on + strandat 719.969 kb on + strandat 719.970 kb on - strandat 719.970 kb on - strandat 720.051 kb on - strand, within LU632_RS03560at 720.203 kb on + strand, within LU632_RS03560at 720.216 kb on - strand, within LU632_RS03560at 720.265 kb on - strand, within LU632_RS03560at 720.511 kb on - strand, within LU632_RS03560at 720.600 kb on + strand, within LU632_RS03560at 720.608 kb on - strand, within LU632_RS03560

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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718,099 + -0.5
718,227 - LU632_RS03550 0.15 -2.5
718,239 - LU632_RS03550 0.16 +0.6
718,247 + LU632_RS03550 0.17 +0.3
718,302 + LU632_RS03550 0.22 -1.3
718,302 + LU632_RS03550 0.22 -1.2
718,421 + LU632_RS03550 0.34 -0.1
718,480 + LU632_RS03550 0.39 -1.0
718,480 + LU632_RS03550 0.39 -1.9
718,480 + LU632_RS03550 0.39 +1.0
718,480 + LU632_RS03550 0.39 +1.0
718,481 - LU632_RS03550 0.39 -0.4
718,481 - LU632_RS03550 0.39 -0.6
718,481 - LU632_RS03550 0.39 +0.5
718,514 - LU632_RS03550 0.43 +1.5
718,516 + LU632_RS03550 0.43 +0.2
718,562 + LU632_RS03550 0.47 +1.5
718,577 - LU632_RS03550 0.49 +0.4
718,591 + LU632_RS03550 0.50 -1.0
718,592 - LU632_RS03550 0.50 +0.5
718,604 + LU632_RS03550 0.52 +0.2
718,605 - LU632_RS03550 0.52 -0.9
718,605 - LU632_RS03550 0.52 +0.1
718,605 - LU632_RS03550 0.52 +0.2
718,711 + LU632_RS03550 0.62 -0.6
718,712 - LU632_RS03550 0.62 -2.4
718,712 - LU632_RS03550 0.62 -0.1
718,740 + LU632_RS03550 0.65 -1.0
718,789 - LU632_RS03550 0.70 -0.8
718,849 + LU632_RS03550 0.75 -1.3
718,850 - LU632_RS03550 0.76 -1.8
718,850 - LU632_RS03550 0.76 +0.4
718,899 + LU632_RS03550 0.80 -0.6
718,899 + LU632_RS03550 0.80 -0.6
719,270 + LU632_RS03555 0.23 +2.3
719,347 - LU632_RS03555 0.34 +1.2
719,347 - LU632_RS03555 0.34 +0.1
719,347 - LU632_RS03555 0.34 +0.8
719,351 - LU632_RS03555 0.34 +1.1
719,351 - LU632_RS03555 0.34 +1.0
719,461 - LU632_RS03555 0.49 +0.2
719,592 + LU632_RS03555 0.66 -1.6
719,593 - LU632_RS03555 0.67 +0.6
719,860 - -0.5
719,969 + -0.5
719,969 + -0.5
719,970 - +1.1
719,970 - +0.9
720,051 - LU632_RS03560 0.12 -1.1
720,203 + LU632_RS03560 0.20 -0.0
720,216 - LU632_RS03560 0.21 -0.2
720,265 - LU632_RS03560 0.24 -0.5
720,511 - LU632_RS03560 0.38 +0.5
720,600 + LU632_RS03560 0.43 -0.0
720,608 - LU632_RS03560 0.43 -1.0

Or see this region's nucleotide sequence