Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03470

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS03460 and LU632_RS03465 are separated by 30 nucleotidesLU632_RS03465 and LU632_RS03470 are separated by 503 nucleotidesLU632_RS03470 and LU632_RS03475 are separated by 58 nucleotidesLU632_RS03475 and LU632_RS03480 are separated by 260 nucleotides LU632_RS03460: LU632_RS03460 - IS91 family transposase, at 706,544 to 707,767 _RS03460 LU632_RS03465: LU632_RS03465 - hypothetical protein, at 707,798 to 707,953 _RS03465 LU632_RS03470: LU632_RS03470 - hypothetical protein, at 708,457 to 708,939 _RS03470 LU632_RS03475: LU632_RS03475 - hypothetical protein, at 708,998 to 709,186 _RS03475 LU632_RS03480: LU632_RS03480 - tyrosine-type recombinase/integrase, at 709,447 to 710,481 _RS03480 Position (kb) 708 709Strain fitness (log2 ratio) -2 -1 0 1 2 3at 707.873 kb on + strand, within LU632_RS03465at 707.873 kb on + strand, within LU632_RS03465at 707.955 kb on - strandat 707.964 kb on + strandat 707.967 kb on + strandat 707.979 kb on - strandat 707.981 kb on - strandat 708.074 kb on + strandat 708.077 kb on + strandat 708.077 kb on + strandat 708.077 kb on + strandat 708.078 kb on - strandat 708.078 kb on - strandat 708.081 kb on + strandat 708.082 kb on - strandat 708.150 kb on - strandat 708.213 kb on - strandat 708.229 kb on - strandat 708.242 kb on + strandat 708.300 kb on + strandat 708.301 kb on - strandat 708.334 kb on + strandat 708.335 kb on - strandat 708.358 kb on + strandat 708.359 kb on - strandat 708.361 kb on - strandat 708.424 kb on + strandat 708.425 kb on - strandat 708.451 kb on + strandat 708.451 kb on + strandat 708.451 kb on + strandat 708.452 kb on - strandat 708.452 kb on - strandat 708.452 kb on - strandat 708.452 kb on - strandat 708.491 kb on + strandat 708.533 kb on + strand, within LU632_RS03470at 708.534 kb on - strand, within LU632_RS03470at 708.551 kb on - strand, within LU632_RS03470at 708.599 kb on + strand, within LU632_RS03470at 708.703 kb on + strand, within LU632_RS03470at 708.704 kb on - strand, within LU632_RS03470at 708.770 kb on + strand, within LU632_RS03470at 708.771 kb on - strand, within LU632_RS03470at 708.772 kb on + strand, within LU632_RS03470at 708.773 kb on - strand, within LU632_RS03470at 708.835 kb on + strand, within LU632_RS03470at 708.835 kb on + strand, within LU632_RS03470at 708.835 kb on + strand, within LU632_RS03470at 708.836 kb on - strand, within LU632_RS03470at 708.836 kb on - strand, within LU632_RS03470at 708.953 kb on - strandat 708.962 kb on + strandat 708.972 kb on + strandat 708.972 kb on + strandat 708.972 kb on + strandat 708.995 kb on - strandat 708.997 kb on + strandat 708.997 kb on + strandat 708.997 kb on + strandat 708.998 kb on - strandat 709.003 kb on - strandat 709.027 kb on + strand, within LU632_RS03475at 709.028 kb on - strand, within LU632_RS03475at 709.030 kb on + strand, within LU632_RS03475at 709.080 kb on + strand, within LU632_RS03475at 709.085 kb on - strand, within LU632_RS03475at 709.094 kb on - strand, within LU632_RS03475at 709.105 kb on - strand, within LU632_RS03475at 709.155 kb on - strand, within LU632_RS03475at 709.251 kb on - strandat 709.251 kb on - strandat 709.444 kb on + strandat 709.455 kb on + strandat 709.523 kb on - strandat 709.565 kb on - strand, within LU632_RS03480at 709.565 kb on - strand, within LU632_RS03480at 709.602 kb on + strand, within LU632_RS03480at 709.620 kb on + strand, within LU632_RS03480at 709.657 kb on - strand, within LU632_RS03480at 709.716 kb on - strand, within LU632_RS03480at 709.763 kb on + strand, within LU632_RS03480at 709.764 kb on - strand, within LU632_RS03480at 709.780 kb on - strand, within LU632_RS03480at 709.817 kb on + strand, within LU632_RS03480at 709.817 kb on + strand, within LU632_RS03480at 709.817 kb on + strand, within LU632_RS03480at 709.817 kb on + strand, within LU632_RS03480at 709.936 kb on - strand, within LU632_RS03480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
remove
707,873 + LU632_RS03465 0.48 -1.5
707,873 + LU632_RS03465 0.48 -0.6
707,955 - +0.9
707,964 + +0.4
707,967 + -1.9
707,979 - -0.9
707,981 - -0.5
708,074 + +1.1
708,077 + +0.1
708,077 + +0.0
708,077 + +0.5
708,078 - -1.9
708,078 - +0.5
708,081 + -1.0
708,082 - +0.2
708,150 - +1.0
708,213 - +0.3
708,229 - -0.5
708,242 + -1.4
708,300 + +1.3
708,301 - +0.8
708,334 + +0.1
708,335 - +1.5
708,358 + -1.0
708,359 - +0.0
708,361 - -0.3
708,424 + -1.8
708,425 - -0.3
708,451 + -0.8
708,451 + +2.0
708,451 + -0.0
708,452 - +0.1
708,452 - -0.8
708,452 - -0.3
708,452 - -1.5
708,491 + -1.2
708,533 + LU632_RS03470 0.16 +0.8
708,534 - LU632_RS03470 0.16 +2.0
708,551 - LU632_RS03470 0.19 -0.6
708,599 + LU632_RS03470 0.29 +1.5
708,703 + LU632_RS03470 0.51 +0.6
708,704 - LU632_RS03470 0.51 +0.6
708,770 + LU632_RS03470 0.65 +3.0
708,771 - LU632_RS03470 0.65 +0.5
708,772 + LU632_RS03470 0.65 +0.8
708,773 - LU632_RS03470 0.65 -1.0
708,835 + LU632_RS03470 0.78 +0.3
708,835 + LU632_RS03470 0.78 -1.0
708,835 + LU632_RS03470 0.78 +0.8
708,836 - LU632_RS03470 0.78 -0.7
708,836 - LU632_RS03470 0.78 +1.9
708,953 - -1.2
708,962 + +0.2
708,972 + +2.7
708,972 + +2.2
708,972 + -1.3
708,995 - +0.5
708,997 + -0.0
708,997 + +0.1
708,997 + -0.1
708,998 - -0.5
709,003 - -0.5
709,027 + LU632_RS03475 0.15 +0.1
709,028 - LU632_RS03475 0.16 +0.4
709,030 + LU632_RS03475 0.17 +1.4
709,080 + LU632_RS03475 0.43 +2.3
709,085 - LU632_RS03475 0.46 -0.5
709,094 - LU632_RS03475 0.51 +0.3
709,105 - LU632_RS03475 0.57 +1.2
709,155 - LU632_RS03475 0.83 -0.2
709,251 - -1.8
709,251 - +0.3
709,444 + +0.4
709,455 + -0.4
709,523 - -0.5
709,565 - LU632_RS03480 0.11 -0.0
709,565 - LU632_RS03480 0.11 -1.5
709,602 + LU632_RS03480 0.15 -1.5
709,620 + LU632_RS03480 0.17 -1.2
709,657 - LU632_RS03480 0.20 -1.3
709,716 - LU632_RS03480 0.26 +0.6
709,763 + LU632_RS03480 0.31 -1.4
709,764 - LU632_RS03480 0.31 -0.5
709,780 - LU632_RS03480 0.32 +0.2
709,817 + LU632_RS03480 0.36 -0.8
709,817 + LU632_RS03480 0.36 -1.0
709,817 + LU632_RS03480 0.36 +1.3
709,817 + LU632_RS03480 0.36 +1.1
709,936 - LU632_RS03480 0.47 -1.1

Or see this region's nucleotide sequence