Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03365 and LU632_RS03370 are separated by 53 nucleotides LU632_RS03370 and LU632_RS03375 are separated by 4 nucleotides LU632_RS03375 and LU632_RS03380 overlap by 4 nucleotides LU632_RS03380 and LU632_RS03385 are separated by 213 nucleotides
LU632_RS03365: LU632_RS03365 - IS1 family transposase, at 691,656 to 692,353
_RS03365
LU632_RS03370: LU632_RS03370 - integrase, at 692,407 to 692,592
_RS03370
LU632_RS03375: LU632_RS03375 - Fic family protein, at 692,597 to 693,211
_RS03375
LU632_RS03380: LU632_RS03380 - hypothetical protein, at 693,208 to 693,366
_RS03380
LU632_RS03385: LU632_RS03385 - HNH endonuclease, at 693,580 to 693,852
_RS03385
Position (kb) 692
693 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 691.431 kb on + strand at 691.432 kb on - strand at 691.473 kb on + strand at 691.473 kb on + strand at 691.474 kb on - strand at 691.474 kb on - strand at 691.595 kb on + strand at 691.596 kb on - strand at 691.612 kb on + strand at 691.629 kb on + strand at 691.630 kb on - strand at 691.630 kb on - strand at 692.378 kb on + strand at 692.378 kb on + strand at 692.378 kb on + strand at 692.473 kb on + strand, within LU632_RS03370 at 692.614 kb on + strand at 692.615 kb on - strand at 692.615 kb on - strand at 692.615 kb on - strand at 692.665 kb on + strand, within LU632_RS03375 at 692.666 kb on - strand, within LU632_RS03375 at 692.668 kb on + strand, within LU632_RS03375 at 692.668 kb on + strand, within LU632_RS03375 at 692.742 kb on + strand, within LU632_RS03375 at 692.742 kb on + strand, within LU632_RS03375 at 692.743 kb on - strand, within LU632_RS03375 at 692.785 kb on + strand, within LU632_RS03375 at 692.785 kb on + strand, within LU632_RS03375 at 692.786 kb on - strand, within LU632_RS03375 at 692.822 kb on + strand, within LU632_RS03375 at 692.823 kb on - strand, within LU632_RS03375 at 692.823 kb on - strand, within LU632_RS03375 at 692.856 kb on + strand, within LU632_RS03375 at 692.860 kb on + strand, within LU632_RS03375 at 692.958 kb on + strand, within LU632_RS03375 at 693.167 kb on + strand at 693.168 kb on - strand at 693.168 kb on - strand at 693.168 kb on - strand at 693.196 kb on + strand at 693.197 kb on - strand at 693.197 kb on - strand at 693.198 kb on + strand at 693.199 kb on - strand at 693.199 kb on - strand at 693.399 kb on - strand at 693.474 kb on + strand at 693.527 kb on - strand at 693.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 691,431 + +0.1 691,432 - -0.5 691,473 + -0.4 691,473 + -1.6 691,474 - -1.6 691,474 - -0.1 691,595 + -1.1 691,596 - -0.9 691,612 + +0.9 691,629 + +1.2 691,630 - +1.1 691,630 - -0.1 692,378 + -0.8 692,378 + +0.9 692,378 + -0.0 692,473 + LU632_RS03370 0.35 -2.1 692,614 + +0.0 692,615 - -0.4 692,615 - +0.4 692,615 - +2.8 692,665 + LU632_RS03375 0.11 +0.2 692,666 - LU632_RS03375 0.11 +0.9 692,668 + LU632_RS03375 0.12 +0.2 692,668 + LU632_RS03375 0.12 -0.0 692,742 + LU632_RS03375 0.24 +0.2 692,742 + LU632_RS03375 0.24 +1.0 692,743 - LU632_RS03375 0.24 +1.0 692,785 + LU632_RS03375 0.31 +0.8 692,785 + LU632_RS03375 0.31 -0.9 692,786 - LU632_RS03375 0.31 -0.5 692,822 + LU632_RS03375 0.37 -0.3 692,823 - LU632_RS03375 0.37 +1.8 692,823 - LU632_RS03375 0.37 -0.1 692,856 + LU632_RS03375 0.42 -0.9 692,860 + LU632_RS03375 0.43 -1.1 692,958 + LU632_RS03375 0.59 -0.2 693,167 + -1.9 693,168 - +0.0 693,168 - +3.4 693,168 - +1.1 693,196 + -1.9 693,197 - -0.5 693,197 - +0.3 693,198 + -1.2 693,199 - +2.3 693,199 - -0.0 693,399 - -0.1 693,474 + +1.8 693,527 - -0.5 693,561 - -0.3
Or see this region's nucleotide sequence