Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03290 and LU632_RS03295 are separated by 340 nucleotides LU632_RS03295 and LU632_RS03300 are separated by 160 nucleotides
LU632_RS03290: LU632_RS03290 - diguanylate cyclase, at 672,631 to 674,544
_RS03290
LU632_RS03295: LU632_RS03295 - aminoimidazole riboside kinase, at 674,885 to 675,802
_RS03295
LU632_RS03300: LU632_RS03300 - carbohydrate porin, at 675,963 to 677,525
_RS03300
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 674.033 kb on - strand, within LU632_RS03290 at 674.078 kb on + strand, within LU632_RS03290 at 674.280 kb on + strand, within LU632_RS03290 at 674.281 kb on - strand, within LU632_RS03290 at 674.664 kb on + strand at 674.711 kb on + strand at 674.711 kb on + strand at 674.711 kb on + strand at 674.712 kb on - strand at 674.714 kb on + strand at 674.758 kb on + strand at 674.759 kb on - strand at 674.815 kb on - strand at 674.955 kb on + strand at 675.026 kb on - strand, within LU632_RS03295 at 675.061 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.091 kb on - strand, within LU632_RS03295 at 675.095 kb on - strand, within LU632_RS03295 at 675.095 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.175 kb on + strand, within LU632_RS03295 at 675.175 kb on + strand, within LU632_RS03295 at 675.208 kb on + strand, within LU632_RS03295 at 675.236 kb on - strand, within LU632_RS03295 at 675.463 kb on + strand, within LU632_RS03295 at 675.464 kb on - strand, within LU632_RS03295 at 675.584 kb on + strand, within LU632_RS03295 at 675.584 kb on + strand, within LU632_RS03295 at 675.585 kb on - strand, within LU632_RS03295 at 675.585 kb on - strand, within LU632_RS03295 at 675.833 kb on - strand at 675.883 kb on - strand at 676.006 kb on + strand at 676.049 kb on + strand at 676.049 kb on + strand at 676.425 kb on + strand, within LU632_RS03300 at 676.426 kb on - strand, within LU632_RS03300 at 676.426 kb on - strand, within LU632_RS03300 at 676.512 kb on - strand, within LU632_RS03300 at 676.516 kb on - strand, within LU632_RS03300 at 676.516 kb on - strand, within LU632_RS03300 at 676.710 kb on + strand, within LU632_RS03300 at 676.711 kb on - strand, within LU632_RS03300 at 676.755 kb on + strand, within LU632_RS03300 at 676.756 kb on - strand, within LU632_RS03300 at 676.764 kb on - strand, within LU632_RS03300
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 674,033 - LU632_RS03290 0.73 -0.6 674,078 + LU632_RS03290 0.76 -2.4 674,280 + LU632_RS03290 0.86 -1.0 674,281 - LU632_RS03290 0.86 +0.4 674,664 + -0.5 674,711 + +1.4 674,711 + +0.2 674,711 + -0.6 674,712 - +0.2 674,714 + -1.3 674,758 + +2.2 674,759 - -2.5 674,815 - -2.2 674,955 + +0.8 675,026 - LU632_RS03295 0.15 +0.7 675,061 + LU632_RS03295 0.19 +0.3 675,090 + LU632_RS03295 0.22 +2.0 675,090 + LU632_RS03295 0.22 +4.5 675,090 + LU632_RS03295 0.22 +1.1 675,091 - LU632_RS03295 0.22 +1.2 675,095 - LU632_RS03295 0.23 +1.9 675,095 - LU632_RS03295 0.23 +4.3 675,104 - LU632_RS03295 0.24 +0.3 675,104 - LU632_RS03295 0.24 +0.8 675,104 - LU632_RS03295 0.24 +2.4 675,104 - LU632_RS03295 0.24 +2.3 675,175 + LU632_RS03295 0.32 +1.0 675,175 + LU632_RS03295 0.32 +0.6 675,208 + LU632_RS03295 0.35 +0.9 675,236 - LU632_RS03295 0.38 +0.6 675,463 + LU632_RS03295 0.63 +2.6 675,464 - LU632_RS03295 0.63 +1.5 675,584 + LU632_RS03295 0.76 -1.8 675,584 + LU632_RS03295 0.76 +0.2 675,585 - LU632_RS03295 0.76 +0.7 675,585 - LU632_RS03295 0.76 +1.4 675,833 - -1.4 675,883 - -1.4 676,006 + +0.2 676,049 + -1.6 676,049 + -0.6 676,425 + LU632_RS03300 0.30 -0.1 676,426 - LU632_RS03300 0.30 -1.7 676,426 - LU632_RS03300 0.30 -1.8 676,512 - LU632_RS03300 0.35 +0.3 676,516 - LU632_RS03300 0.35 -0.0 676,516 - LU632_RS03300 0.35 -2.6 676,710 + LU632_RS03300 0.48 -0.5 676,711 - LU632_RS03300 0.48 +0.2 676,755 + LU632_RS03300 0.51 -1.3 676,756 - LU632_RS03300 0.51 -2.1 676,764 - LU632_RS03300 0.51 -0.1
Or see this region's nucleotide sequence