Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03195

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03190 and LU632_RS03195 overlap by 8 nucleotidesLU632_RS03195 and LU632_RS03200 are separated by 359 nucleotides LU632_RS03190: LU632_RS03190 - PAS domain-containing sensor histidine kinase, at 653,120 to 654,619 _RS03190 LU632_RS03195: LU632_RS03195 - response regulator transcription factor, at 654,612 to 655,253 _RS03195 LU632_RS03200: LU632_RS03200 - sigma-54 dependent transcriptional regulator, at 655,613 to 656,590 _RS03200 Position (kb) 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 653.615 kb on + strand, within LU632_RS03190at 653.675 kb on - strand, within LU632_RS03190at 653.675 kb on - strand, within LU632_RS03190at 653.717 kb on - strand, within LU632_RS03190at 653.717 kb on - strand, within LU632_RS03190at 653.857 kb on + strand, within LU632_RS03190at 653.937 kb on + strand, within LU632_RS03190at 653.937 kb on + strand, within LU632_RS03190at 653.937 kb on + strand, within LU632_RS03190at 653.937 kb on + strand, within LU632_RS03190at 653.937 kb on + strand, within LU632_RS03190at 654.046 kb on + strand, within LU632_RS03190at 654.239 kb on - strand, within LU632_RS03190at 654.340 kb on + strand, within LU632_RS03190at 654.410 kb on - strand, within LU632_RS03190at 654.460 kb on + strand, within LU632_RS03190at 654.461 kb on - strand, within LU632_RS03190at 654.584 kb on - strandat 654.608 kb on + strandat 654.608 kb on + strandat 654.617 kb on + strandat 654.621 kb on - strandat 654.621 kb on - strandat 654.788 kb on + strand, within LU632_RS03195at 654.789 kb on - strand, within LU632_RS03195at 654.789 kb on - strand, within LU632_RS03195at 654.789 kb on - strand, within LU632_RS03195at 654.789 kb on - strand, within LU632_RS03195at 654.824 kb on + strand, within LU632_RS03195at 654.825 kb on - strand, within LU632_RS03195at 654.870 kb on + strand, within LU632_RS03195at 654.870 kb on + strand, within LU632_RS03195at 654.870 kb on + strand, within LU632_RS03195at 654.871 kb on - strand, within LU632_RS03195at 654.927 kb on - strand, within LU632_RS03195at 655.033 kb on - strand, within LU632_RS03195at 655.033 kb on - strand, within LU632_RS03195at 655.033 kb on - strand, within LU632_RS03195at 655.121 kb on + strand, within LU632_RS03195at 655.152 kb on - strand, within LU632_RS03195at 655.214 kb on + strandat 655.225 kb on - strandat 655.225 kb on - strandat 655.231 kb on + strandat 655.258 kb on - strandat 655.264 kb on - strandat 655.271 kb on + strandat 655.272 kb on - strandat 655.344 kb on + strandat 655.442 kb on - strandat 655.442 kb on - strandat 655.485 kb on - strandat 655.527 kb on + strandat 655.550 kb on + strandat 655.613 kb on - strandat 655.700 kb on - strandat 655.700 kb on - strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.702 kb on - strandat 655.702 kb on - strandat 655.702 kb on - strandat 655.702 kb on - strandat 655.702 kb on - strandat 655.911 kb on - strand, within LU632_RS03200at 655.990 kb on + strand, within LU632_RS03200at 655.991 kb on - strand, within LU632_RS03200at 656.012 kb on - strand, within LU632_RS03200at 656.012 kb on - strand, within LU632_RS03200at 656.035 kb on + strand, within LU632_RS03200at 656.153 kb on + strand, within LU632_RS03200at 656.153 kb on + strand, within LU632_RS03200at 656.153 kb on + strand, within LU632_RS03200at 656.165 kb on - strand, within LU632_RS03200at 656.165 kb on - strand, within LU632_RS03200at 656.215 kb on + strand, within LU632_RS03200at 656.215 kb on + strand, within LU632_RS03200at 656.216 kb on - strand, within LU632_RS03200at 656.230 kb on + strand, within LU632_RS03200

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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653,615 + LU632_RS03190 0.33 +0.9
653,675 - LU632_RS03190 0.37 -0.5
653,675 - LU632_RS03190 0.37 +2.1
653,717 - LU632_RS03190 0.40 -1.6
653,717 - LU632_RS03190 0.40 -0.6
653,857 + LU632_RS03190 0.49 -0.3
653,937 + LU632_RS03190 0.54 +0.1
653,937 + LU632_RS03190 0.54 -0.1
653,937 + LU632_RS03190 0.54 -0.0
653,937 + LU632_RS03190 0.54 -0.8
653,937 + LU632_RS03190 0.54 +1.1
654,046 + LU632_RS03190 0.62 -0.4
654,239 - LU632_RS03190 0.75 +2.0
654,340 + LU632_RS03190 0.81 -0.7
654,410 - LU632_RS03190 0.86 -1.4
654,460 + LU632_RS03190 0.89 -0.1
654,461 - LU632_RS03190 0.89 -0.1
654,584 - +0.0
654,608 + -1.1
654,608 + -2.1
654,617 + -0.3
654,621 - +0.7
654,621 - +0.1
654,788 + LU632_RS03195 0.27 +1.0
654,789 - LU632_RS03195 0.28 +0.7
654,789 - LU632_RS03195 0.28 +0.8
654,789 - LU632_RS03195 0.28 -0.0
654,789 - LU632_RS03195 0.28 +1.2
654,824 + LU632_RS03195 0.33 -1.3
654,825 - LU632_RS03195 0.33 +0.3
654,870 + LU632_RS03195 0.40 +0.8
654,870 + LU632_RS03195 0.40 +2.8
654,870 + LU632_RS03195 0.40 +0.5
654,871 - LU632_RS03195 0.40 +1.0
654,927 - LU632_RS03195 0.49 +0.1
655,033 - LU632_RS03195 0.66 +1.3
655,033 - LU632_RS03195 0.66 -1.8
655,033 - LU632_RS03195 0.66 +2.2
655,121 + LU632_RS03195 0.79 +1.1
655,152 - LU632_RS03195 0.84 -0.2
655,214 + +0.5
655,225 - +0.8
655,225 - +3.4
655,231 + +0.1
655,258 - +0.5
655,264 - -2.4
655,271 + +0.8
655,272 - +4.4
655,344 + +1.3
655,442 - +0.8
655,442 - -0.2
655,485 - -0.6
655,527 + +0.9
655,550 + -0.1
655,613 - -0.0
655,700 - -2.6
655,700 - +0.8
655,701 + -2.7
655,701 + -0.1
655,701 + -1.1
655,701 + -0.4
655,701 + -0.6
655,701 + +1.7
655,702 - +1.3
655,702 - -0.8
655,702 - -0.8
655,702 - +0.9
655,702 - +2.2
655,911 - LU632_RS03200 0.30 -0.1
655,990 + LU632_RS03200 0.39 +0.5
655,991 - LU632_RS03200 0.39 -0.3
656,012 - LU632_RS03200 0.41 -0.4
656,012 - LU632_RS03200 0.41 -1.3
656,035 + LU632_RS03200 0.43 -0.6
656,153 + LU632_RS03200 0.55 +0.1
656,153 + LU632_RS03200 0.55 +0.2
656,153 + LU632_RS03200 0.55 +0.2
656,165 - LU632_RS03200 0.56 -0.2
656,165 - LU632_RS03200 0.56 +0.5
656,215 + LU632_RS03200 0.62 +2.7
656,215 + LU632_RS03200 0.62 +0.0
656,216 - LU632_RS03200 0.62 +2.2
656,230 + LU632_RS03200 0.63 -0.8

Or see this region's nucleotide sequence