Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctN and sctD overlap by 7 nucleotides sctD and sctV overlap by 22 nucleotides
LU632_RS03165: sctN - type III secretion system ATPase SctN, at 646,570 to 647,937
sctN
LU632_RS03170: sctD - type III secretion system inner membrane ring subunit SctD, at 647,931 to 648,851
sctD
LU632_RS03175: sctV - type III secretion system export apparatus subunit SctV, at 648,830 to 650,983
sctV
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 646.974 kb on - strand, within sctN at 647.214 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.218 kb on - strand, within sctN at 647.218 kb on - strand, within sctN at 647.220 kb on + strand, within sctN at 647.261 kb on - strand, within sctN at 647.533 kb on + strand, within sctN at 647.534 kb on - strand, within sctN at 647.534 kb on - strand, within sctN at 647.634 kb on + strand, within sctN at 647.635 kb on - strand, within sctN at 647.644 kb on + strand, within sctN at 647.645 kb on - strand, within sctN at 647.645 kb on - strand, within sctN at 647.649 kb on - strand, within sctN at 647.779 kb on + strand, within sctN at 647.867 kb on + strand at 647.875 kb on - strand at 647.982 kb on - strand at 648.125 kb on + strand, within sctD at 648.125 kb on + strand, within sctD at 648.126 kb on - strand, within sctD at 648.126 kb on - strand, within sctD at 648.149 kb on - strand, within sctD at 648.149 kb on - strand, within sctD at 648.376 kb on - strand, within sctD at 648.422 kb on - strand, within sctD at 648.708 kb on + strand, within sctD at 648.911 kb on - strand at 648.998 kb on + strand at 648.998 kb on + strand at 648.999 kb on - strand at 649.030 kb on + strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.036 kb on + strand at 649.036 kb on + strand at 649.036 kb on + strand at 649.036 kb on + strand at 649.037 kb on - strand at 649.078 kb on + strand, within sctV at 649.084 kb on - strand, within sctV at 649.084 kb on - strand, within sctV at 649.197 kb on + strand, within sctV at 649.197 kb on - strand, within sctV at 649.198 kb on - strand, within sctV at 649.210 kb on + strand, within sctV at 649.210 kb on + strand, within sctV at 649.210 kb on + strand, within sctV at 649.211 kb on - strand, within sctV at 649.228 kb on + strand, within sctV at 649.228 kb on + strand, within sctV at 649.229 kb on - strand, within sctV at 649.300 kb on + strand, within sctV at 649.300 kb on + strand, within sctV at 649.300 kb on + strand, within sctV at 649.301 kb on - strand, within sctV at 649.301 kb on - strand, within sctV at 649.301 kb on - strand, within sctV at 649.301 kb on - strand, within sctV at 649.322 kb on - strand, within sctV at 649.322 kb on - strand, within sctV at 649.454 kb on - strand, within sctV at 649.718 kb on + strand, within sctV at 649.718 kb on + strand, within sctV at 649.719 kb on - strand, within sctV at 649.719 kb on - strand, within sctV at 649.719 kb on - strand, within sctV at 649.719 kb on - strand, within sctV at 649.719 kb on - strand, within sctV
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 646,974 - sctN LU632_RS03165 0.30 -1.1 647,214 + sctN LU632_RS03165 0.47 +2.0 647,217 + sctN LU632_RS03165 0.47 -0.8 647,217 + sctN LU632_RS03165 0.47 -1.3 647,217 + sctN LU632_RS03165 0.47 -0.3 647,217 + sctN LU632_RS03165 0.47 -0.8 647,217 + sctN LU632_RS03165 0.47 -0.2 647,218 - sctN LU632_RS03165 0.47 -1.5 647,218 - sctN LU632_RS03165 0.47 -0.8 647,220 + sctN LU632_RS03165 0.48 -0.8 647,261 - sctN LU632_RS03165 0.51 +0.2 647,533 + sctN LU632_RS03165 0.70 +6.6 647,534 - sctN LU632_RS03165 0.70 -1.1 647,534 - sctN LU632_RS03165 0.70 -1.7 647,634 + sctN LU632_RS03165 0.78 -1.9 647,635 - sctN LU632_RS03165 0.78 +0.3 647,644 + sctN LU632_RS03165 0.79 -0.5 647,645 - sctN LU632_RS03165 0.79 -1.5 647,645 - sctN LU632_RS03165 0.79 -0.2 647,649 - sctN LU632_RS03165 0.79 -1.6 647,779 + sctN LU632_RS03165 0.88 -0.1 647,867 + -1.1 647,875 - +0.3 647,982 - -1.5 648,125 + sctD LU632_RS03170 0.21 +0.1 648,125 + sctD LU632_RS03170 0.21 -2.5 648,126 - sctD LU632_RS03170 0.21 -1.7 648,126 - sctD LU632_RS03170 0.21 -1.5 648,149 - sctD LU632_RS03170 0.24 -1.4 648,149 - sctD LU632_RS03170 0.24 -0.1 648,376 - sctD LU632_RS03170 0.48 +0.4 648,422 - sctD LU632_RS03170 0.53 -0.7 648,708 + sctD LU632_RS03170 0.84 -0.9 648,911 - -1.6 648,998 + -1.3 648,998 + +0.4 648,999 - -0.5 649,030 + +0.1 649,031 - -2.4 649,031 - +0.5 649,036 + +1.5 649,036 + -0.5 649,036 + +1.3 649,036 + -2.5 649,037 - -0.2 649,078 + sctV LU632_RS03175 0.12 +0.5 649,084 - sctV LU632_RS03175 0.12 +2.4 649,084 - sctV LU632_RS03175 0.12 -0.8 649,197 + sctV LU632_RS03175 0.17 +1.2 649,197 - sctV LU632_RS03175 0.17 +0.6 649,198 - sctV LU632_RS03175 0.17 +5.2 649,210 + sctV LU632_RS03175 0.18 +2.1 649,210 + sctV LU632_RS03175 0.18 +1.3 649,210 + sctV LU632_RS03175 0.18 +0.5 649,211 - sctV LU632_RS03175 0.18 -1.1 649,228 + sctV LU632_RS03175 0.18 -1.9 649,228 + sctV LU632_RS03175 0.18 -0.7 649,229 - sctV LU632_RS03175 0.19 -1.6 649,300 + sctV LU632_RS03175 0.22 +0.6 649,300 + sctV LU632_RS03175 0.22 +1.1 649,300 + sctV LU632_RS03175 0.22 -0.5 649,301 - sctV LU632_RS03175 0.22 +0.8 649,301 - sctV LU632_RS03175 0.22 -0.5 649,301 - sctV LU632_RS03175 0.22 -3.6 649,301 - sctV LU632_RS03175 0.22 +5.1 649,322 - sctV LU632_RS03175 0.23 -0.8 649,322 - sctV LU632_RS03175 0.23 +2.2 649,454 - sctV LU632_RS03175 0.29 -1.9 649,718 + sctV LU632_RS03175 0.41 -1.2 649,718 + sctV LU632_RS03175 0.41 +1.1 649,719 - sctV LU632_RS03175 0.41 -0.8 649,719 - sctV LU632_RS03175 0.41 +1.3 649,719 - sctV LU632_RS03175 0.41 +1.5 649,719 - sctV LU632_RS03175 0.41 +0.4 649,719 - sctV LU632_RS03175 0.41 -2.6
Or see this region's nucleotide sequence