Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctQ and LU632_RS03155 overlap by 4 nucleotides LU632_RS03155 and LU632_RS03160 overlap by 1 nucleotides LU632_RS03160 and sctN overlap by 17 nucleotides
LU632_RS03150: sctQ - type III secretion system cytoplasmic ring protein SctQ, at 644,624 to 645,673
sctQ
LU632_RS03155: LU632_RS03155 - type III secretion system HrpP C-terminal domain-containing protein, at 645,670 to 646,143
_RS03155
LU632_RS03160: LU632_RS03160 - hypothetical protein, at 646,143 to 646,586
_RS03160
LU632_RS03165: sctN - type III secretion system ATPase SctN, at 646,570 to 647,937
sctN
Position (kb) 646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 645.168 kb on + strand, within sctQ at 645.168 kb on + strand, within sctQ at 645.169 kb on - strand, within sctQ at 645.252 kb on + strand, within sctQ at 645.252 kb on + strand, within sctQ at 645.253 kb on - strand, within sctQ at 645.253 kb on - strand, within sctQ at 645.305 kb on + strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.376 kb on - strand, within sctQ at 645.454 kb on + strand, within sctQ at 645.454 kb on + strand, within sctQ at 645.454 kb on + strand, within sctQ at 645.454 kb on + strand, within sctQ at 645.455 kb on - strand, within sctQ at 645.489 kb on + strand, within sctQ at 645.559 kb on + strand, within sctQ at 645.560 kb on - strand, within sctQ at 645.560 kb on - strand, within sctQ at 645.591 kb on + strand at 645.591 kb on + strand at 645.592 kb on - strand at 645.674 kb on - strand at 645.861 kb on + strand, within LU632_RS03155 at 645.862 kb on - strand, within LU632_RS03155 at 645.978 kb on + strand, within LU632_RS03155 at 645.999 kb on - strand, within LU632_RS03155 at 646.065 kb on + strand, within LU632_RS03155 at 646.066 kb on - strand, within LU632_RS03155 at 646.066 kb on - strand, within LU632_RS03155 at 646.137 kb on + strand at 646.137 kb on + strand at 646.137 kb on + strand at 646.138 kb on - strand at 646.138 kb on - strand at 646.138 kb on - strand at 646.138 kb on - strand at 646.171 kb on + strand at 646.171 kb on + strand at 646.171 kb on + strand at 646.172 kb on - strand at 646.172 kb on - strand at 646.267 kb on + strand, within LU632_RS03160 at 646.268 kb on - strand, within LU632_RS03160 at 646.286 kb on + strand, within LU632_RS03160 at 646.287 kb on - strand, within LU632_RS03160 at 646.359 kb on + strand, within LU632_RS03160 at 646.360 kb on - strand, within LU632_RS03160 at 646.668 kb on + strand at 646.722 kb on - strand, within sctN at 646.737 kb on + strand, within sctN at 646.757 kb on + strand, within sctN at 646.758 kb on - strand, within sctN at 646.758 kb on - strand, within sctN at 646.797 kb on + strand, within sctN at 646.798 kb on - strand, within sctN at 646.798 kb on - strand, within sctN at 646.798 kb on - strand, within sctN at 646.798 kb on - strand, within sctN at 646.798 kb on - strand, within sctN at 646.974 kb on - strand, within sctN at 647.214 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.217 kb on + strand, within sctN at 647.218 kb on - strand, within sctN at 647.218 kb on - strand, within sctN at 647.220 kb on + strand, within sctN at 647.261 kb on - strand, within sctN at 647.533 kb on + strand, within sctN at 647.534 kb on - strand, within sctN at 647.534 kb on - strand, within sctN
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 645,168 + sctQ LU632_RS03150 0.52 -0.5 645,168 + sctQ LU632_RS03150 0.52 +0.5 645,169 - sctQ LU632_RS03150 0.52 -2.3 645,252 + sctQ LU632_RS03150 0.60 -0.5 645,252 + sctQ LU632_RS03150 0.60 -1.0 645,253 - sctQ LU632_RS03150 0.60 +0.0 645,253 - sctQ LU632_RS03150 0.60 -1.3 645,305 + sctQ LU632_RS03150 0.65 +1.4 645,306 - sctQ LU632_RS03150 0.65 -0.2 645,306 - sctQ LU632_RS03150 0.65 +0.1 645,306 - sctQ LU632_RS03150 0.65 -1.1 645,306 - sctQ LU632_RS03150 0.65 -0.7 645,306 - sctQ LU632_RS03150 0.65 -3.3 645,376 - sctQ LU632_RS03150 0.72 -0.7 645,454 + sctQ LU632_RS03150 0.79 -0.1 645,454 + sctQ LU632_RS03150 0.79 -2.2 645,454 + sctQ LU632_RS03150 0.79 -1.6 645,454 + sctQ LU632_RS03150 0.79 -0.1 645,455 - sctQ LU632_RS03150 0.79 -1.8 645,489 + sctQ LU632_RS03150 0.82 +0.3 645,559 + sctQ LU632_RS03150 0.89 -1.1 645,560 - sctQ LU632_RS03150 0.89 +1.1 645,560 - sctQ LU632_RS03150 0.89 +0.2 645,591 + +0.5 645,591 + +0.8 645,592 - -1.7 645,674 - -1.1 645,861 + LU632_RS03155 0.40 +0.8 645,862 - LU632_RS03155 0.41 +2.0 645,978 + LU632_RS03155 0.65 -1.3 645,999 - LU632_RS03155 0.69 +0.2 646,065 + LU632_RS03155 0.83 -1.5 646,066 - LU632_RS03155 0.84 +0.8 646,066 - LU632_RS03155 0.84 -1.6 646,137 + -0.0 646,137 + +0.8 646,137 + -0.8 646,138 - +0.4 646,138 - +0.1 646,138 - +0.2 646,138 - +0.6 646,171 + +0.5 646,171 + +2.8 646,171 + -1.4 646,172 - -1.0 646,172 - -0.5 646,267 + LU632_RS03160 0.28 +0.5 646,268 - LU632_RS03160 0.28 +0.5 646,286 + LU632_RS03160 0.32 -0.5 646,287 - LU632_RS03160 0.32 -1.5 646,359 + LU632_RS03160 0.49 -1.3 646,360 - LU632_RS03160 0.49 -0.9 646,668 + -1.2 646,722 - sctN LU632_RS03165 0.11 -0.3 646,737 + sctN LU632_RS03165 0.12 +1.4 646,757 + sctN LU632_RS03165 0.14 +0.8 646,758 - sctN LU632_RS03165 0.14 +0.1 646,758 - sctN LU632_RS03165 0.14 +1.0 646,797 + sctN LU632_RS03165 0.17 +2.1 646,798 - sctN LU632_RS03165 0.17 -0.7 646,798 - sctN LU632_RS03165 0.17 +0.7 646,798 - sctN LU632_RS03165 0.17 +0.4 646,798 - sctN LU632_RS03165 0.17 +0.3 646,798 - sctN LU632_RS03165 0.17 +0.8 646,974 - sctN LU632_RS03165 0.30 -1.1 647,214 + sctN LU632_RS03165 0.47 +2.0 647,217 + sctN LU632_RS03165 0.47 -0.8 647,217 + sctN LU632_RS03165 0.47 -1.3 647,217 + sctN LU632_RS03165 0.47 -0.3 647,217 + sctN LU632_RS03165 0.47 -0.8 647,217 + sctN LU632_RS03165 0.47 -0.2 647,218 - sctN LU632_RS03165 0.47 -1.5 647,218 - sctN LU632_RS03165 0.47 -0.8 647,220 + sctN LU632_RS03165 0.48 -0.8 647,261 - sctN LU632_RS03165 0.51 +0.2 647,533 + sctN LU632_RS03165 0.70 +6.6 647,534 - sctN LU632_RS03165 0.70 -1.1 647,534 - sctN LU632_RS03165 0.70 -1.7
Or see this region's nucleotide sequence