Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02640 and LU632_RS02645 are separated by 79 nucleotides LU632_RS02645 and satP are separated by 408 nucleotides
LU632_RS02640: LU632_RS02640 - MFS transporter, at 527,828 to 529,147
_RS02640
LU632_RS02645: LU632_RS02645 - IS1 family transposase, at 529,227 to 529,924
_RS02645
LU632_RS02650: satP - acetate uptake transporter, at 530,333 to 530,902
satP
Position (kb) 529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 528.281 kb on - strand, within LU632_RS02640 at 528.547 kb on + strand, within LU632_RS02640 at 528.568 kb on + strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.699 kb on + strand, within LU632_RS02640 at 528.761 kb on - strand, within LU632_RS02640 at 528.804 kb on - strand, within LU632_RS02640 at 528.891 kb on - strand, within LU632_RS02640 at 528.947 kb on + strand, within LU632_RS02640 at 528.947 kb on + strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.949 kb on + strand, within LU632_RS02640 at 528.960 kb on - strand, within LU632_RS02640 at 528.989 kb on - strand, within LU632_RS02640 at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.038 kb on + strand at 529.039 kb on - strand at 529.076 kb on + strand at 529.076 kb on + strand at 529.076 kb on + strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.093 kb on + strand at 529.158 kb on - strand at 529.202 kb on - strand at 529.202 kb on - strand at 529.943 kb on + strand at 529.956 kb on + strand at 529.999 kb on + strand at 530.065 kb on - strand at 530.081 kb on + strand at 530.117 kb on + strand at 530.267 kb on - strand at 530.270 kb on + strand at 530.271 kb on - strand at 530.294 kb on + strand at 530.294 kb on + strand at 530.302 kb on - strand at 530.334 kb on + strand at 530.373 kb on - strand at 530.428 kb on + strand, within satP at 530.429 kb on - strand, within satP at 530.457 kb on - strand, within satP at 530.462 kb on - strand, within satP at 530.504 kb on + strand, within satP at 530.504 kb on + strand, within satP at 530.656 kb on + strand, within satP at 530.729 kb on - strand, within satP at 530.902 kb on + strand at 530.903 kb on - strand at 530.903 kb on - strand at 530.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 528,281 - LU632_RS02640 0.34 +2.3 528,547 + LU632_RS02640 0.54 +2.1 528,568 + LU632_RS02640 0.56 +0.9 528,680 - LU632_RS02640 0.65 +1.5 528,680 - LU632_RS02640 0.65 +0.6 528,680 - LU632_RS02640 0.65 -0.4 528,680 - LU632_RS02640 0.65 -0.6 528,699 + LU632_RS02640 0.66 +0.1 528,761 - LU632_RS02640 0.71 +0.0 528,804 - LU632_RS02640 0.74 +1.6 528,891 - LU632_RS02640 0.81 +1.8 528,947 + LU632_RS02640 0.85 -0.4 528,947 + LU632_RS02640 0.85 -0.6 528,948 - LU632_RS02640 0.85 -0.2 528,948 - LU632_RS02640 0.85 +1.0 528,948 - LU632_RS02640 0.85 +1.7 528,949 + LU632_RS02640 0.85 +0.2 528,960 - LU632_RS02640 0.86 -2.0 528,989 - LU632_RS02640 0.88 +0.9 529,034 + -0.5 529,034 + -0.2 529,034 + +1.1 529,034 + -2.6 529,034 + -0.3 529,035 - +1.0 529,035 - -0.1 529,035 - +0.2 529,035 - +0.7 529,038 + +0.0 529,039 - +1.8 529,076 + +1.0 529,076 + +1.3 529,076 + +0.6 529,077 - +0.1 529,077 - -0.3 529,077 - -0.9 529,077 - -2.3 529,077 - -1.4 529,077 - +0.0 529,077 - +0.4 529,077 - -1.4 529,093 + +0.0 529,158 - +0.1 529,202 - -0.5 529,202 - +0.6 529,943 + +0.2 529,956 + -0.3 529,999 + -0.5 530,065 - +1.5 530,081 + -0.6 530,117 + -0.1 530,267 - -1.2 530,270 + -3.1 530,271 - +0.9 530,294 + -0.7 530,294 + +0.7 530,302 - -3.2 530,334 + +0.8 530,373 - -1.4 530,428 + satP LU632_RS02650 0.17 +1.0 530,429 - satP LU632_RS02650 0.17 -0.1 530,457 - satP LU632_RS02650 0.22 +0.5 530,462 - satP LU632_RS02650 0.23 -0.3 530,504 + satP LU632_RS02650 0.30 -1.9 530,504 + satP LU632_RS02650 0.30 +2.3 530,656 + satP LU632_RS02650 0.57 +0.8 530,729 - satP LU632_RS02650 0.69 +1.4 530,902 + +0.4 530,903 - +1.4 530,903 - -3.1 530,903 - +1.0
Or see this region's nucleotide sequence