Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02610

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthrA and thrB are separated by 2 nucleotidesthrB and thrC are separated by 3 nucleotides LU632_RS02610: thrA - bifunctional aspartate kinase/homoserine dehydrogenase I, at 520,215 to 522,677 thrA LU632_RS02615: thrB - homoserine kinase, at 522,680 to 523,609 thrB LU632_RS02620: thrC - threonine synthase, at 523,613 to 524,899 thrC Position (kb) 520 521 522 523Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 519.395 kb on - strandat 519.405 kb on - strandat 519.587 kb on - strandat 519.620 kb on + strandat 519.662 kb on - strandat 519.764 kb on - strandat 519.784 kb on + strandat 519.785 kb on - strandat 519.809 kb on - strandat 519.863 kb on - strandat 519.884 kb on - strandat 519.979 kb on + strandat 520.023 kb on - strandat 520.049 kb on - strandat 520.056 kb on - strandat 520.071 kb on + strandat 520.095 kb on + strandat 520.099 kb on - strandat 520.099 kb on - strandat 520.111 kb on - strandat 520.140 kb on - strandat 520.395 kb on - strandat 520.403 kb on + strandat 520.528 kb on + strand, within thrAat 520.580 kb on - strand, within thrAat 520.913 kb on + strand, within thrAat 520.965 kb on + strand, within thrAat 520.989 kb on + strand, within thrAat 521.021 kb on + strand, within thrAat 521.021 kb on + strand, within thrAat 521.228 kb on + strand, within thrAat 521.229 kb on - strand, within thrAat 521.281 kb on - strand, within thrAat 521.416 kb on + strand, within thrAat 521.450 kb on - strand, within thrAat 521.700 kb on - strand, within thrAat 521.700 kb on - strand, within thrAat 521.855 kb on + strand, within thrAat 521.905 kb on - strand, within thrAat 521.976 kb on + strand, within thrAat 521.976 kb on + strand, within thrAat 521.977 kb on - strand, within thrAat 521.977 kb on - strand, within thrAat 521.977 kb on - strand, within thrAat 521.989 kb on + strand, within thrAat 521.989 kb on + strand, within thrAat 521.989 kb on + strand, within thrAat 521.994 kb on + strand, within thrAat 522.061 kb on + strand, within thrAat 522.140 kb on + strand, within thrAat 522.141 kb on - strand, within thrAat 522.141 kb on - strand, within thrAat 522.166 kb on + strand, within thrAat 522.167 kb on - strand, within thrAat 522.435 kb on - strandat 522.519 kb on + strandat 522.519 kb on + strandat 522.650 kb on + strandat 522.651 kb on - strandat 522.723 kb on + strandat 522.787 kb on + strand, within thrBat 522.842 kb on - strand, within thrBat 522.869 kb on - strand, within thrBat 523.016 kb on + strand, within thrBat 523.016 kb on + strand, within thrBat 523.017 kb on - strand, within thrBat 523.017 kb on - strand, within thrBat 523.219 kb on + strand, within thrBat 523.219 kb on + strand, within thrBat 523.262 kb on + strand, within thrBat 523.263 kb on - strand, within thrBat 523.263 kb on - strand, within thrBat 523.384 kb on + strand, within thrBat 523.427 kb on - strand, within thrBat 523.432 kb on + strand, within thrBat 523.499 kb on - strand, within thrBat 523.539 kb on - strandat 523.539 kb on - strandat 523.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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519,395 - -0.4
519,405 - -0.4
519,587 - -0.3
519,620 + -1.6
519,662 - -0.7
519,764 - -0.9
519,784 + +0.8
519,785 - +1.8
519,809 - +1.2
519,863 - +4.0
519,884 - +0.3
519,979 + +0.1
520,023 - -1.5
520,049 - -1.4
520,056 - -1.4
520,071 + +1.0
520,095 + -2.5
520,099 - -0.3
520,099 - +0.3
520,111 - -1.2
520,140 - -0.1
520,395 - +0.0
520,403 + -1.6
520,528 + thrA LU632_RS02610 0.13 -1.3
520,580 - thrA LU632_RS02610 0.15 -1.6
520,913 + thrA LU632_RS02610 0.28 -2.0
520,965 + thrA LU632_RS02610 0.30 -2.0
520,989 + thrA LU632_RS02610 0.31 -1.7
521,021 + thrA LU632_RS02610 0.33 +0.6
521,021 + thrA LU632_RS02610 0.33 -0.3
521,228 + thrA LU632_RS02610 0.41 -0.5
521,229 - thrA LU632_RS02610 0.41 -0.5
521,281 - thrA LU632_RS02610 0.43 -0.5
521,416 + thrA LU632_RS02610 0.49 +1.6
521,450 - thrA LU632_RS02610 0.50 -1.0
521,700 - thrA LU632_RS02610 0.60 -2.3
521,700 - thrA LU632_RS02610 0.60 -0.4
521,855 + thrA LU632_RS02610 0.67 -1.0
521,905 - thrA LU632_RS02610 0.69 -1.5
521,976 + thrA LU632_RS02610 0.71 -1.0
521,976 + thrA LU632_RS02610 0.71 +0.6
521,977 - thrA LU632_RS02610 0.72 +0.6
521,977 - thrA LU632_RS02610 0.72 +0.0
521,977 - thrA LU632_RS02610 0.72 +0.0
521,989 + thrA LU632_RS02610 0.72 -2.8
521,989 + thrA LU632_RS02610 0.72 -0.7
521,989 + thrA LU632_RS02610 0.72 -0.7
521,994 + thrA LU632_RS02610 0.72 -1.6
522,061 + thrA LU632_RS02610 0.75 -0.4
522,140 + thrA LU632_RS02610 0.78 +1.6
522,141 - thrA LU632_RS02610 0.78 -0.2
522,141 - thrA LU632_RS02610 0.78 +0.6
522,166 + thrA LU632_RS02610 0.79 -1.0
522,167 - thrA LU632_RS02610 0.79 -0.4
522,435 - -1.6
522,519 + -2.8
522,519 + -1.4
522,650 + -1.4
522,651 - +0.0
522,723 + -0.4
522,787 + thrB LU632_RS02615 0.12 +0.0
522,842 - thrB LU632_RS02615 0.17 -2.0
522,869 - thrB LU632_RS02615 0.20 -0.4
523,016 + thrB LU632_RS02615 0.36 -1.9
523,016 + thrB LU632_RS02615 0.36 +0.6
523,017 - thrB LU632_RS02615 0.36 +1.0
523,017 - thrB LU632_RS02615 0.36 +0.0
523,219 + thrB LU632_RS02615 0.58 -1.4
523,219 + thrB LU632_RS02615 0.58 +0.8
523,262 + thrB LU632_RS02615 0.63 -2.8
523,263 - thrB LU632_RS02615 0.63 -1.4
523,263 - thrB LU632_RS02615 0.63 +0.8
523,384 + thrB LU632_RS02615 0.76 -0.7
523,427 - thrB LU632_RS02615 0.80 +0.6
523,432 + thrB LU632_RS02615 0.81 -1.6
523,499 - thrB LU632_RS02615 0.88 -0.9
523,539 - -1.4
523,539 - -1.4
523,568 - -3.2

Or see this region's nucleotide sequence