Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prfC and tnpA are separated by 171 nucleotides tnpA and osmY are separated by 306 nucleotides osmY and LU632_RS02490 are separated by 140 nucleotides LU632_RS02490 and LU632_RS02495 are separated by 96 nucleotides
LU632_RS02475: prfC - peptide chain release factor 3, at 491,600 to 493,189
prfC
LU632_RS02480: tnpA - IS200/IS605 family transposase, at 493,361 to 493,798
tnpA
LU632_RS02485: osmY - molecular chaperone OsmY, at 494,105 to 494,719
osmY
LU632_RS02490: LU632_RS02490 - DUF1328 domain-containing protein, at 494,860 to 495,021
_RS02490
LU632_RS02495: LU632_RS02495 - IS256 family transposase, at 495,118 to 496,326
_RS02495
Position (kb) 494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 493.107 kb on - strand at 493.107 kb on - strand at 493.107 kb on - strand at 493.195 kb on + strand at 493.206 kb on + strand at 493.206 kb on + strand at 493.207 kb on - strand at 493.207 kb on - strand at 493.207 kb on - strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.941 kb on + strand at 493.942 kb on - strand at 493.949 kb on - strand at 493.979 kb on + strand at 493.991 kb on + strand at 494.005 kb on + strand at 494.117 kb on - strand at 494.134 kb on + strand at 494.135 kb on - strand at 494.142 kb on + strand at 494.143 kb on - strand at 494.171 kb on + strand, within osmY at 494.188 kb on + strand, within osmY at 494.212 kb on + strand, within osmY at 494.329 kb on + strand, within osmY at 494.330 kb on - strand, within osmY at 494.342 kb on - strand, within osmY at 494.497 kb on - strand, within osmY at 494.542 kb on + strand, within osmY at 494.542 kb on + strand, within osmY at 494.543 kb on - strand, within osmY at 494.543 kb on - strand, within osmY at 494.575 kb on + strand, within osmY at 494.702 kb on - strand at 494.772 kb on - strand at 494.772 kb on - strand at 494.781 kb on + strand at 494.782 kb on - strand at 494.782 kb on - strand at 494.787 kb on - strand at 494.860 kb on - strand at 494.934 kb on + strand, within LU632_RS02490 at 494.976 kb on + strand, within LU632_RS02490 at 494.977 kb on - strand, within LU632_RS02490 at 495.350 kb on + strand, within LU632_RS02495 at 495.350 kb on + strand, within LU632_RS02495
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 493,107 - +1.1 493,107 - +0.4 493,107 - -0.7 493,195 + -0.1 493,206 + -0.8 493,206 + +0.0 493,207 - -1.7 493,207 - -0.7 493,207 - +2.5 493,939 + +1.9 493,939 + -0.1 493,941 + +0.3 493,942 - -0.3 493,949 - +0.5 493,979 + -0.4 493,991 + +0.0 494,005 + -2.8 494,117 - +3.5 494,134 + -0.5 494,135 - -0.8 494,142 + +0.7 494,143 - +0.9 494,171 + osmY LU632_RS02485 0.11 -0.1 494,188 + osmY LU632_RS02485 0.13 +1.2 494,212 + osmY LU632_RS02485 0.17 +1.6 494,329 + osmY LU632_RS02485 0.36 +0.3 494,330 - osmY LU632_RS02485 0.37 +2.0 494,342 - osmY LU632_RS02485 0.39 +1.1 494,497 - osmY LU632_RS02485 0.64 -2.5 494,542 + osmY LU632_RS02485 0.71 -0.2 494,542 + osmY LU632_RS02485 0.71 +2.4 494,543 - osmY LU632_RS02485 0.71 +0.2 494,543 - osmY LU632_RS02485 0.71 +0.1 494,575 + osmY LU632_RS02485 0.76 +3.4 494,702 - -0.6 494,772 - +0.9 494,772 - -2.3 494,781 + -0.9 494,782 - -1.0 494,782 - +1.9 494,787 - +0.9 494,860 - -0.6 494,934 + LU632_RS02490 0.46 +1.8 494,976 + LU632_RS02490 0.72 -1.4 494,977 - LU632_RS02490 0.72 -2.8 495,350 + LU632_RS02495 0.19 -0.2 495,350 + LU632_RS02495 0.19 +0.3
Or see this region's nucleotide sequence