Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02105

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS02100 and LU632_RS02105 are separated by 519 nucleotidesLU632_RS02105 and LU632_RS02110 overlap by 4 nucleotides LU632_RS02100: LU632_RS02100 - hemolysin family protein, at 411,874 to 413,205 _RS02100 LU632_RS02105: LU632_RS02105 - autotransporter assembly complex protein TamA, at 413,725 to 415,449 _RS02105 LU632_RS02110: LU632_RS02110 - translocation/assembly module TamB, at 415,446 to 419,213 _RS02110 Position (kb) 413 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 412.725 kb on + strand, within LU632_RS02100at 412.899 kb on + strand, within LU632_RS02100at 412.900 kb on - strand, within LU632_RS02100at 413.061 kb on + strand, within LU632_RS02100at 413.082 kb on + strandat 413.083 kb on - strandat 413.083 kb on - strandat 413.166 kb on + strandat 413.197 kb on - strandat 413.197 kb on - strandat 413.201 kb on - strandat 413.205 kb on + strandat 413.216 kb on + strandat 413.216 kb on + strandat 413.246 kb on - strandat 413.398 kb on + strandat 413.399 kb on - strandat 413.406 kb on + strandat 413.428 kb on + strandat 413.434 kb on + strandat 413.435 kb on - strandat 413.473 kb on + strandat 413.477 kb on + strandat 413.477 kb on + strandat 413.486 kb on + strandat 413.487 kb on - strandat 413.494 kb on + strandat 413.497 kb on - strandat 413.545 kb on - strandat 413.569 kb on + strandat 413.570 kb on - strandat 413.570 kb on - strandat 413.642 kb on + strandat 413.697 kb on + strandat 413.720 kb on - strandat 413.732 kb on - strandat 413.904 kb on - strand, within LU632_RS02105at 413.904 kb on - strand, within LU632_RS02105at 413.932 kb on + strand, within LU632_RS02105at 414.006 kb on - strand, within LU632_RS02105at 414.021 kb on + strand, within LU632_RS02105at 414.080 kb on - strand, within LU632_RS02105at 414.123 kb on - strand, within LU632_RS02105at 414.140 kb on - strand, within LU632_RS02105at 414.150 kb on + strand, within LU632_RS02105at 414.168 kb on + strand, within LU632_RS02105at 414.202 kb on + strand, within LU632_RS02105at 414.203 kb on - strand, within LU632_RS02105at 414.364 kb on + strand, within LU632_RS02105at 414.364 kb on + strand, within LU632_RS02105at 414.364 kb on + strand, within LU632_RS02105at 414.365 kb on - strand, within LU632_RS02105at 414.368 kb on - strand, within LU632_RS02105at 414.423 kb on + strand, within LU632_RS02105at 414.514 kb on - strand, within LU632_RS02105at 414.530 kb on + strand, within LU632_RS02105at 414.530 kb on + strand, within LU632_RS02105at 414.530 kb on + strand, within LU632_RS02105at 414.536 kb on - strand, within LU632_RS02105at 414.591 kb on + strand, within LU632_RS02105at 414.595 kb on + strand, within LU632_RS02105at 414.658 kb on + strand, within LU632_RS02105at 414.661 kb on - strand, within LU632_RS02105at 414.694 kb on + strand, within LU632_RS02105at 414.694 kb on + strand, within LU632_RS02105at 414.695 kb on - strand, within LU632_RS02105at 414.695 kb on - strand, within LU632_RS02105at 414.697 kb on + strand, within LU632_RS02105at 414.698 kb on - strand, within LU632_RS02105at 414.698 kb on - strand, within LU632_RS02105at 414.698 kb on - strand, within LU632_RS02105at 414.738 kb on + strand, within LU632_RS02105at 415.159 kb on - strand, within LU632_RS02105at 415.231 kb on + strand, within LU632_RS02105at 415.232 kb on - strand, within LU632_RS02105at 415.237 kb on + strand, within LU632_RS02105at 415.238 kb on - strand, within LU632_RS02105at 415.238 kb on - strand, within LU632_RS02105at 415.239 kb on + strand, within LU632_RS02105at 415.239 kb on + strand, within LU632_RS02105at 415.239 kb on + strand, within LU632_RS02105at 415.413 kb on + strandat 415.415 kb on + strandat 415.415 kb on + strandat 415.415 kb on + strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.424 kb on - strandat 415.424 kb on - strandat 415.446 kb on - strandat 415.496 kb on - strandat 415.498 kb on + strandat 415.498 kb on + strandat 415.498 kb on + strandat 415.502 kb on + strandat 415.520 kb on - strandat 415.661 kb on + strandat 415.859 kb on + strand, within LU632_RS02110at 415.859 kb on + strand, within LU632_RS02110at 415.859 kb on + strand, within LU632_RS02110at 415.860 kb on - strand, within LU632_RS02110at 415.871 kb on + strand, within LU632_RS02110at 415.871 kb on + strand, within LU632_RS02110at 415.872 kb on - strand, within LU632_RS02110at 415.872 kb on - strand, within LU632_RS02110at 415.875 kb on - strand, within LU632_RS02110at 416.027 kb on - strand, within LU632_RS02110at 416.143 kb on + strand, within LU632_RS02110at 416.171 kb on + strand, within LU632_RS02110at 416.172 kb on - strand, within LU632_RS02110at 416.172 kb on - strand, within LU632_RS02110at 416.172 kb on - strand, within LU632_RS02110at 416.199 kb on - strand, within LU632_RS02110at 416.209 kb on + strand, within LU632_RS02110at 416.209 kb on + strand, within LU632_RS02110at 416.210 kb on - strand, within LU632_RS02110at 416.237 kb on - strand, within LU632_RS02110at 416.312 kb on + strand, within LU632_RS02110at 416.340 kb on - strand, within LU632_RS02110

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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412,725 + LU632_RS02100 0.64 -2.3
412,899 + LU632_RS02100 0.77 -0.3
412,900 - LU632_RS02100 0.77 -0.9
413,061 + LU632_RS02100 0.89 +0.8
413,082 + +2.6
413,083 - -1.9
413,083 - -1.3
413,166 + -0.7
413,197 - -2.1
413,197 - -1.3
413,201 - -0.4
413,205 + -2.0
413,216 + -0.9
413,216 + -1.8
413,246 - +0.2
413,398 + -0.8
413,399 - +0.3
413,406 + -1.2
413,428 + -2.2
413,434 + +3.4
413,435 - +0.6
413,473 + -1.6
413,477 + +0.8
413,477 + -0.1
413,486 + +1.2
413,487 - +0.6
413,494 + -0.4
413,497 - +1.6
413,545 - +0.9
413,569 + +0.1
413,570 - -0.2
413,570 - +1.3
413,642 + -0.7
413,697 + -1.3
413,720 - -0.9
413,732 - +1.9
413,904 - LU632_RS02105 0.10 +0.3
413,904 - LU632_RS02105 0.10 +1.6
413,932 + LU632_RS02105 0.12 -0.8
414,006 - LU632_RS02105 0.16 -0.6
414,021 + LU632_RS02105 0.17 -0.4
414,080 - LU632_RS02105 0.21 -3.1
414,123 - LU632_RS02105 0.23 -2.5
414,140 - LU632_RS02105 0.24 +3.2
414,150 + LU632_RS02105 0.25 +0.5
414,168 + LU632_RS02105 0.26 -0.4
414,202 + LU632_RS02105 0.28 -2.3
414,203 - LU632_RS02105 0.28 -3.2
414,364 + LU632_RS02105 0.37 -0.1
414,364 + LU632_RS02105 0.37 -1.5
414,364 + LU632_RS02105 0.37 +0.8
414,365 - LU632_RS02105 0.37 +0.3
414,368 - LU632_RS02105 0.37 -0.6
414,423 + LU632_RS02105 0.40 -1.5
414,514 - LU632_RS02105 0.46 -1.0
414,530 + LU632_RS02105 0.47 -0.0
414,530 + LU632_RS02105 0.47 -0.8
414,530 + LU632_RS02105 0.47 -1.0
414,536 - LU632_RS02105 0.47 +0.1
414,591 + LU632_RS02105 0.50 -0.7
414,595 + LU632_RS02105 0.50 +0.0
414,658 + LU632_RS02105 0.54 +1.2
414,661 - LU632_RS02105 0.54 -2.0
414,694 + LU632_RS02105 0.56 -1.6
414,694 + LU632_RS02105 0.56 -0.6
414,695 - LU632_RS02105 0.56 -0.3
414,695 - LU632_RS02105 0.56 -1.4
414,697 + LU632_RS02105 0.56 -0.4
414,698 - LU632_RS02105 0.56 +0.0
414,698 - LU632_RS02105 0.56 -3.0
414,698 - LU632_RS02105 0.56 +2.1
414,738 + LU632_RS02105 0.59 +0.9
415,159 - LU632_RS02105 0.83 -1.2
415,231 + LU632_RS02105 0.87 +0.9
415,232 - LU632_RS02105 0.87 +2.5
415,237 + LU632_RS02105 0.88 -1.6
415,238 - LU632_RS02105 0.88 -1.3
415,238 - LU632_RS02105 0.88 +0.4
415,239 + LU632_RS02105 0.88 -0.8
415,239 + LU632_RS02105 0.88 +0.1
415,239 + LU632_RS02105 0.88 +0.1
415,413 + +0.1
415,415 + +0.9
415,415 + +0.8
415,415 + -1.7
415,416 - -1.2
415,416 - -0.8
415,416 - +0.5
415,416 - +0.8
415,416 - +0.3
415,416 - +1.8
415,416 - -0.8
415,424 - -1.2
415,424 - +0.7
415,446 - +0.6
415,496 - +1.6
415,498 + -0.6
415,498 + -0.2
415,498 + +0.9
415,502 + -2.0
415,520 - -0.0
415,661 + -1.5
415,859 + LU632_RS02110 0.11 -1.3
415,859 + LU632_RS02110 0.11 +0.1
415,859 + LU632_RS02110 0.11 -0.4
415,860 - LU632_RS02110 0.11 -0.7
415,871 + LU632_RS02110 0.11 -1.7
415,871 + LU632_RS02110 0.11 +0.0
415,872 - LU632_RS02110 0.11 +1.4
415,872 - LU632_RS02110 0.11 +0.2
415,875 - LU632_RS02110 0.11 +0.1
416,027 - LU632_RS02110 0.15 -0.2
416,143 + LU632_RS02110 0.18 +1.5
416,171 + LU632_RS02110 0.19 +0.1
416,172 - LU632_RS02110 0.19 +0.8
416,172 - LU632_RS02110 0.19 -2.0
416,172 - LU632_RS02110 0.19 -0.4
416,199 - LU632_RS02110 0.20 +0.9
416,209 + LU632_RS02110 0.20 -1.2
416,209 + LU632_RS02110 0.20 -2.3
416,210 - LU632_RS02110 0.20 -1.4
416,237 - LU632_RS02110 0.21 -0.3
416,312 + LU632_RS02110 0.23 +0.2
416,340 - LU632_RS02110 0.24 -0.7

Or see this region's nucleotide sequence