Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01965 and LU632_RS01970 are separated by 127 nucleotides LU632_RS01970 and LU632_RS01975 overlap by 35 nucleotides LU632_RS01975 and LU632_RS01980 are separated by 82 nucleotides
LU632_RS01965: LU632_RS01965 - type 1 fimbrial protein, at 376,636 to 377,217
_RS01965
LU632_RS01970: LU632_RS01970 - molecular chaperone, at 377,345 to 378,064
_RS01970
LU632_RS01975: LU632_RS01975 - fimbrial biogenesis outer membrane usher protein, at 378,030 to 380,648
_RS01975
LU632_RS01980: LU632_RS01980 - fimbrial protein, at 380,731 to 381,633
_RS01980
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 377.079 kb on - strand, within LU632_RS01965 at 377.143 kb on + strand, within LU632_RS01965 at 377.144 kb on - strand, within LU632_RS01965 at 377.374 kb on + strand at 378.176 kb on + strand at 378.308 kb on - strand, within LU632_RS01975 at 378.371 kb on + strand, within LU632_RS01975 at 378.725 kb on + strand, within LU632_RS01975 at 378.726 kb on - strand, within LU632_RS01975 at 378.729 kb on + strand, within LU632_RS01975 at 378.740 kb on + strand, within LU632_RS01975 at 378.740 kb on + strand, within LU632_RS01975 at 378.742 kb on + strand, within LU632_RS01975 at 378.743 kb on - strand, within LU632_RS01975 at 378.753 kb on + strand, within LU632_RS01975 at 378.768 kb on - strand, within LU632_RS01975 at 378.874 kb on + strand, within LU632_RS01975 at 378.886 kb on + strand, within LU632_RS01975 at 378.957 kb on + strand, within LU632_RS01975 at 378.962 kb on + strand, within LU632_RS01975 at 378.968 kb on + strand, within LU632_RS01975 at 378.969 kb on - strand, within LU632_RS01975 at 379.032 kb on - strand, within LU632_RS01975 at 379.035 kb on - strand, within LU632_RS01975 at 379.079 kb on - strand, within LU632_RS01975 at 379.087 kb on + strand, within LU632_RS01975 at 379.209 kb on - strand, within LU632_RS01975 at 379.223 kb on - strand, within LU632_RS01975 at 379.237 kb on + strand, within LU632_RS01975 at 379.243 kb on - strand, within LU632_RS01975 at 379.304 kb on + strand, within LU632_RS01975 at 379.352 kb on - strand, within LU632_RS01975 at 379.361 kb on + strand, within LU632_RS01975 at 379.361 kb on + strand, within LU632_RS01975 at 379.363 kb on + strand, within LU632_RS01975 at 379.417 kb on + strand, within LU632_RS01975 at 379.434 kb on - strand, within LU632_RS01975 at 379.443 kb on + strand, within LU632_RS01975 at 379.449 kb on - strand, within LU632_RS01975 at 379.532 kb on - strand, within LU632_RS01975 at 379.574 kb on + strand, within LU632_RS01975 at 379.575 kb on - strand, within LU632_RS01975 at 379.577 kb on - strand, within LU632_RS01975 at 379.577 kb on - strand, within LU632_RS01975 at 379.760 kb on + strand, within LU632_RS01975 at 379.804 kb on + strand, within LU632_RS01975 at 379.870 kb on - strand, within LU632_RS01975 at 379.973 kb on + strand, within LU632_RS01975 at 380.646 kb on + strand at 380.669 kb on + strand at 380.972 kb on + strand, within LU632_RS01980 at 380.973 kb on - strand, within LU632_RS01980 at 381.134 kb on + strand, within LU632_RS01980 at 381.232 kb on - strand, within LU632_RS01980 at 381.269 kb on - strand, within LU632_RS01980 at 381.322 kb on - strand, within LU632_RS01980 at 381.375 kb on + strand, within LU632_RS01980 at 381.439 kb on - strand, within LU632_RS01980
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 377,079 - LU632_RS01965 0.76 +0.6 377,143 + LU632_RS01965 0.87 +1.1 377,144 - LU632_RS01965 0.87 +0.9 377,374 + +0.8 378,176 + +0.7 378,308 - LU632_RS01975 0.11 +0.9 378,371 + LU632_RS01975 0.13 +3.3 378,725 + LU632_RS01975 0.27 +2.5 378,726 - LU632_RS01975 0.27 -1.4 378,729 + LU632_RS01975 0.27 +1.1 378,740 + LU632_RS01975 0.27 +0.5 378,740 + LU632_RS01975 0.27 +0.5 378,742 + LU632_RS01975 0.27 +1.3 378,743 - LU632_RS01975 0.27 +0.7 378,753 + LU632_RS01975 0.28 +0.8 378,768 - LU632_RS01975 0.28 +0.2 378,874 + LU632_RS01975 0.32 +2.1 378,886 + LU632_RS01975 0.33 +1.3 378,957 + LU632_RS01975 0.35 +0.2 378,962 + LU632_RS01975 0.36 +1.4 378,968 + LU632_RS01975 0.36 +2.9 378,969 - LU632_RS01975 0.36 -0.7 379,032 - LU632_RS01975 0.38 +0.4 379,035 - LU632_RS01975 0.38 -0.2 379,079 - LU632_RS01975 0.40 +0.4 379,087 + LU632_RS01975 0.40 +1.0 379,209 - LU632_RS01975 0.45 +0.3 379,223 - LU632_RS01975 0.46 -1.5 379,237 + LU632_RS01975 0.46 +2.4 379,243 - LU632_RS01975 0.46 +1.2 379,304 + LU632_RS01975 0.49 -0.5 379,352 - LU632_RS01975 0.50 +0.7 379,361 + LU632_RS01975 0.51 +0.5 379,361 + LU632_RS01975 0.51 -0.8 379,363 + LU632_RS01975 0.51 +0.0 379,417 + LU632_RS01975 0.53 +2.0 379,434 - LU632_RS01975 0.54 -1.6 379,443 + LU632_RS01975 0.54 +0.7 379,449 - LU632_RS01975 0.54 -1.2 379,532 - LU632_RS01975 0.57 +1.4 379,574 + LU632_RS01975 0.59 +1.3 379,575 - LU632_RS01975 0.59 +1.1 379,577 - LU632_RS01975 0.59 +0.2 379,577 - LU632_RS01975 0.59 +0.6 379,760 + LU632_RS01975 0.66 +0.1 379,804 + LU632_RS01975 0.68 +1.4 379,870 - LU632_RS01975 0.70 +0.9 379,973 + LU632_RS01975 0.74 +0.6 380,646 + -1.1 380,669 + +0.3 380,972 + LU632_RS01980 0.27 +0.0 380,973 - LU632_RS01980 0.27 -1.9 381,134 + LU632_RS01980 0.45 +0.8 381,232 - LU632_RS01980 0.55 +0.4 381,269 - LU632_RS01980 0.60 +1.1 381,322 - LU632_RS01980 0.65 +0.0 381,375 + LU632_RS01980 0.71 -0.0 381,439 - LU632_RS01980 0.78 +0.7
Or see this region's nucleotide sequence