Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01760

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01745 and LU632_RS01750 are separated by 40 nucleotidesLU632_RS01750 and LU632_RS01755 overlap by 8 nucleotidesLU632_RS01755 and LU632_RS01760 overlap by 8 nucleotidesLU632_RS01760 and LU632_RS01765 are separated by 37 nucleotidesLU632_RS01765 and LU632_RS01770 are separated by 12 nucleotidesLU632_RS01770 and LU632_RS01775 are separated by 54 nucleotides LU632_RS01745: LU632_RS01745 - hypothetical protein, at 342,510 to 342,743 _RS01745 LU632_RS01750: LU632_RS01750 - class I SAM-dependent methyltransferase, at 342,784 to 343,233 _RS01750 LU632_RS01755: LU632_RS01755 - hypothetical protein, at 343,226 to 343,501 _RS01755 LU632_RS01760: LU632_RS01760 - hypothetical protein, at 343,494 to 343,772 _RS01760 LU632_RS01765: LU632_RS01765 - LysR family transcriptional regulator, at 343,810 to 344,073 _RS01765 LU632_RS01770: LU632_RS01770 - hypothetical protein, at 344,086 to 344,628 _RS01770 LU632_RS01775: LU632_RS01775 - conjugal transfer protein TraF, at 344,683 to 344,919 _RS01775 Position (kb) 343 344Strain fitness (log2 ratio) -2 -1 0 1 2at 342.523 kb on + strandat 342.523 kb on + strandat 342.541 kb on - strand, within LU632_RS01745at 342.591 kb on + strand, within LU632_RS01745at 342.592 kb on - strand, within LU632_RS01745at 342.592 kb on - strand, within LU632_RS01745at 342.595 kb on + strand, within LU632_RS01745at 342.595 kb on + strand, within LU632_RS01745at 342.686 kb on + strand, within LU632_RS01745at 342.689 kb on + strand, within LU632_RS01745at 342.689 kb on + strand, within LU632_RS01745at 342.804 kb on + strandat 342.805 kb on - strandat 342.805 kb on - strandat 342.805 kb on - strandat 342.822 kb on + strandat 342.822 kb on + strandat 342.969 kb on + strand, within LU632_RS01750at 342.991 kb on + strand, within LU632_RS01750at 343.042 kb on - strand, within LU632_RS01750at 343.042 kb on - strand, within LU632_RS01750at 343.083 kb on + strand, within LU632_RS01750at 343.084 kb on - strand, within LU632_RS01750at 343.132 kb on - strand, within LU632_RS01750at 343.258 kb on + strand, within LU632_RS01755at 343.258 kb on + strand, within LU632_RS01755at 343.258 kb on + strand, within LU632_RS01755at 343.259 kb on - strand, within LU632_RS01755at 343.273 kb on - strand, within LU632_RS01755at 343.423 kb on + strand, within LU632_RS01755at 343.423 kb on + strand, within LU632_RS01755at 343.471 kb on - strand, within LU632_RS01755at 343.471 kb on - strand, within LU632_RS01755at 343.491 kb on + strandat 343.650 kb on - strand, within LU632_RS01760at 343.651 kb on + strand, within LU632_RS01760at 343.651 kb on + strand, within LU632_RS01760at 343.651 kb on + strand, within LU632_RS01760at 343.652 kb on - strand, within LU632_RS01760at 343.652 kb on - strand, within LU632_RS01760at 343.687 kb on + strand, within LU632_RS01760at 343.687 kb on + strand, within LU632_RS01760at 343.687 kb on + strand, within LU632_RS01760at 343.688 kb on - strand, within LU632_RS01760at 343.691 kb on + strand, within LU632_RS01760at 343.692 kb on - strand, within LU632_RS01760at 343.692 kb on - strand, within LU632_RS01760at 343.878 kb on + strand, within LU632_RS01765at 343.878 kb on + strand, within LU632_RS01765at 343.879 kb on - strand, within LU632_RS01765at 343.879 kb on - strand, within LU632_RS01765at 343.879 kb on - strand, within LU632_RS01765at 344.053 kb on + strandat 344.103 kb on + strandat 344.104 kb on - strandat 344.279 kb on + strand, within LU632_RS01770at 344.280 kb on - strand, within LU632_RS01770at 344.358 kb on + strand, within LU632_RS01770at 344.358 kb on + strand, within LU632_RS01770at 344.358 kb on + strand, within LU632_RS01770at 344.358 kb on + strand, within LU632_RS01770at 344.358 kb on + strand, within LU632_RS01770at 344.359 kb on - strand, within LU632_RS01770at 344.359 kb on - strand, within LU632_RS01770at 344.359 kb on - strand, within LU632_RS01770at 344.387 kb on - strand, within LU632_RS01770at 344.680 kb on - strandat 344.680 kb on - strandat 344.680 kb on - strandat 344.686 kb on - strandat 344.705 kb on + strandat 344.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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342,523 + -0.8
342,523 + -0.2
342,541 - LU632_RS01745 0.13 +0.2
342,591 + LU632_RS01745 0.35 +0.1
342,592 - LU632_RS01745 0.35 +0.1
342,592 - LU632_RS01745 0.35 +1.0
342,595 + LU632_RS01745 0.36 -1.2
342,595 + LU632_RS01745 0.36 +0.7
342,686 + LU632_RS01745 0.75 +0.0
342,689 + LU632_RS01745 0.76 -1.5
342,689 + LU632_RS01745 0.76 -0.9
342,804 + +0.4
342,805 - +0.9
342,805 - +0.0
342,805 - -0.5
342,822 + -0.4
342,822 + +1.6
342,969 + LU632_RS01750 0.41 -0.0
342,991 + LU632_RS01750 0.46 +0.6
343,042 - LU632_RS01750 0.57 -0.8
343,042 - LU632_RS01750 0.57 +0.3
343,083 + LU632_RS01750 0.66 -0.5
343,084 - LU632_RS01750 0.67 -0.2
343,132 - LU632_RS01750 0.77 -0.2
343,258 + LU632_RS01755 0.12 +1.7
343,258 + LU632_RS01755 0.12 -0.9
343,258 + LU632_RS01755 0.12 -0.3
343,259 - LU632_RS01755 0.12 +0.5
343,273 - LU632_RS01755 0.17 +0.5
343,423 + LU632_RS01755 0.71 -0.4
343,423 + LU632_RS01755 0.71 +0.3
343,471 - LU632_RS01755 0.89 +0.7
343,471 - LU632_RS01755 0.89 -0.2
343,491 + -0.6
343,650 - LU632_RS01760 0.56 +1.0
343,651 + LU632_RS01760 0.56 +1.6
343,651 + LU632_RS01760 0.56 +1.3
343,651 + LU632_RS01760 0.56 -0.7
343,652 - LU632_RS01760 0.57 -1.0
343,652 - LU632_RS01760 0.57 +0.7
343,687 + LU632_RS01760 0.69 +2.1
343,687 + LU632_RS01760 0.69 -0.2
343,687 + LU632_RS01760 0.69 +0.2
343,688 - LU632_RS01760 0.70 +1.3
343,691 + LU632_RS01760 0.71 -0.6
343,692 - LU632_RS01760 0.71 +2.1
343,692 - LU632_RS01760 0.71 -1.4
343,878 + LU632_RS01765 0.26 +0.3
343,878 + LU632_RS01765 0.26 +0.2
343,879 - LU632_RS01765 0.26 +2.0
343,879 - LU632_RS01765 0.26 -0.2
343,879 - LU632_RS01765 0.26 +0.3
344,053 + -0.7
344,103 + +2.6
344,104 - -0.2
344,279 + LU632_RS01770 0.36 -0.4
344,280 - LU632_RS01770 0.36 +0.6
344,358 + LU632_RS01770 0.50 -0.7
344,358 + LU632_RS01770 0.50 +0.1
344,358 + LU632_RS01770 0.50 -0.9
344,358 + LU632_RS01770 0.50 -2.1
344,358 + LU632_RS01770 0.50 +0.4
344,359 - LU632_RS01770 0.50 -0.3
344,359 - LU632_RS01770 0.50 +1.1
344,359 - LU632_RS01770 0.50 -0.4
344,387 - LU632_RS01770 0.55 -0.4
344,680 - +0.5
344,680 - +1.0
344,680 - +0.9
344,686 - +0.7
344,705 + -0.0
344,705 + +2.0

Or see this region's nucleotide sequence