Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01735 and LU632_RS01740 are separated by 228 nucleotides LU632_RS01740 and LU632_RS01745 are separated by 93 nucleotides LU632_RS01745 and LU632_RS01750 are separated by 40 nucleotides LU632_RS01750 and LU632_RS01755 overlap by 8 nucleotides
LU632_RS01735: LU632_RS01735 - IS481 family transposase, at 340,992 to 342,032
_RS01735
LU632_RS01740: LU632_RS01740 - hypothetical protein, at 342,261 to 342,416
_RS01740
LU632_RS01745: LU632_RS01745 - hypothetical protein, at 342,510 to 342,743
_RS01745
LU632_RS01750: LU632_RS01750 - class I SAM-dependent methyltransferase, at 342,784 to 343,233
_RS01750
LU632_RS01755: LU632_RS01755 - hypothetical protein, at 343,226 to 343,501
_RS01755
Position (kb) 342
343 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 342.108 kb on + strand at 342.125 kb on + strand at 342.159 kb on + strand at 342.159 kb on + strand at 342.201 kb on + strand at 342.214 kb on - strand at 342.214 kb on - strand at 342.217 kb on - strand at 342.345 kb on - strand, within LU632_RS01740 at 342.376 kb on - strand, within LU632_RS01740 at 342.420 kb on + strand at 342.427 kb on - strand at 342.523 kb on + strand at 342.523 kb on + strand at 342.541 kb on - strand, within LU632_RS01745 at 342.591 kb on + strand, within LU632_RS01745 at 342.592 kb on - strand, within LU632_RS01745 at 342.592 kb on - strand, within LU632_RS01745 at 342.595 kb on + strand, within LU632_RS01745 at 342.595 kb on + strand, within LU632_RS01745 at 342.686 kb on + strand, within LU632_RS01745 at 342.689 kb on + strand, within LU632_RS01745 at 342.689 kb on + strand, within LU632_RS01745 at 342.804 kb on + strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.822 kb on + strand at 342.822 kb on + strand at 342.969 kb on + strand, within LU632_RS01750 at 342.991 kb on + strand, within LU632_RS01750 at 343.042 kb on - strand, within LU632_RS01750 at 343.042 kb on - strand, within LU632_RS01750 at 343.083 kb on + strand, within LU632_RS01750 at 343.084 kb on - strand, within LU632_RS01750 at 343.132 kb on - strand, within LU632_RS01750 at 343.258 kb on + strand, within LU632_RS01755 at 343.258 kb on + strand, within LU632_RS01755 at 343.258 kb on + strand, within LU632_RS01755 at 343.259 kb on - strand, within LU632_RS01755 at 343.273 kb on - strand, within LU632_RS01755
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 342,108 + +4.1 342,125 + -1.1 342,159 + +1.0 342,159 + -1.3 342,201 + -2.6 342,214 - -0.2 342,214 - +1.4 342,217 - -1.0 342,345 - LU632_RS01740 0.54 -0.8 342,376 - LU632_RS01740 0.74 -2.1 342,420 + -2.6 342,427 - -0.4 342,523 + -0.8 342,523 + -0.2 342,541 - LU632_RS01745 0.13 +0.2 342,591 + LU632_RS01745 0.35 +0.1 342,592 - LU632_RS01745 0.35 +0.1 342,592 - LU632_RS01745 0.35 +1.0 342,595 + LU632_RS01745 0.36 -1.2 342,595 + LU632_RS01745 0.36 +0.7 342,686 + LU632_RS01745 0.75 +0.0 342,689 + LU632_RS01745 0.76 -1.5 342,689 + LU632_RS01745 0.76 -0.9 342,804 + +0.4 342,805 - +0.9 342,805 - +0.0 342,805 - -0.5 342,822 + -0.4 342,822 + +1.6 342,969 + LU632_RS01750 0.41 -0.0 342,991 + LU632_RS01750 0.46 +0.6 343,042 - LU632_RS01750 0.57 -0.8 343,042 - LU632_RS01750 0.57 +0.3 343,083 + LU632_RS01750 0.66 -0.5 343,084 - LU632_RS01750 0.67 -0.2 343,132 - LU632_RS01750 0.77 -0.2 343,258 + LU632_RS01755 0.12 +1.7 343,258 + LU632_RS01755 0.12 -0.9 343,258 + LU632_RS01755 0.12 -0.3 343,259 - LU632_RS01755 0.12 +0.5 343,273 - LU632_RS01755 0.17 +0.5
Or see this region's nucleotide sequence