Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01695 and LU632_RS01700 are separated by 150 nucleotides LU632_RS01700 and LU632_RS01705 are separated by 38 nucleotides LU632_RS01705 and LU632_RS01710 are separated by 181 nucleotides
LU632_RS01695: LU632_RS01695 - phage tail sheath family protein, at 333,501 to 334,682
_RS01695
LU632_RS01700: LU632_RS01700 - phage late control D family protein, at 334,833 to 335,969
_RS01700
LU632_RS01705: LU632_RS01705 - ogr/Delta-like zinc finger family protein, at 336,008 to 336,256
_RS01705
LU632_RS01710: LU632_RS01710 - hypothetical protein, at 336,438 to 337,049
_RS01710
Position (kb) 334
335
336 Strain fitness (log2 ratio) -1
0
1
2
3 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.893 kb on + strand, within LU632_RS01695 at 334.334 kb on - strand, within LU632_RS01695 at 334.334 kb on - strand, within LU632_RS01695 at 334.334 kb on - strand, within LU632_RS01695 at 334.334 kb on - strand, within LU632_RS01695 at 334.533 kb on + strand, within LU632_RS01695 at 334.656 kb on + strand at 334.881 kb on + strand at 335.116 kb on - strand, within LU632_RS01700 at 335.128 kb on - strand, within LU632_RS01700 at 335.215 kb on + strand, within LU632_RS01700 at 335.227 kb on + strand, within LU632_RS01700 at 335.326 kb on + strand, within LU632_RS01700 at 335.456 kb on + strand, within LU632_RS01700 at 335.538 kb on + strand, within LU632_RS01700 at 335.538 kb on + strand, within LU632_RS01700 at 335.539 kb on - strand, within LU632_RS01700 at 335.539 kb on - strand, within LU632_RS01700 at 335.658 kb on + strand, within LU632_RS01700 at 335.658 kb on + strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700 at 335.686 kb on - strand, within LU632_RS01700 at 335.703 kb on + strand, within LU632_RS01700 at 335.967 kb on + strand at 335.968 kb on - strand at 336.008 kb on - strand at 336.008 kb on - strand at 336.008 kb on - strand at 336.008 kb on - strand at 336.064 kb on + strand, within LU632_RS01705 at 336.070 kb on + strand, within LU632_RS01705 at 336.124 kb on + strand, within LU632_RS01705 at 336.124 kb on + strand, within LU632_RS01705 at 336.224 kb on + strand, within LU632_RS01705 at 336.225 kb on - strand, within LU632_RS01705 at 336.241 kb on - strand at 336.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 333,839 - LU632_RS01695 0.29 -0.0 333,839 - LU632_RS01695 0.29 +0.4 333,839 - LU632_RS01695 0.29 -1.4 333,839 - LU632_RS01695 0.29 -0.5 333,893 + LU632_RS01695 0.33 -0.3 334,334 - LU632_RS01695 0.70 -0.1 334,334 - LU632_RS01695 0.70 +1.6 334,334 - LU632_RS01695 0.70 -0.7 334,334 - LU632_RS01695 0.70 +0.6 334,533 + LU632_RS01695 0.87 +0.2 334,656 + +1.0 334,881 + -0.3 335,116 - LU632_RS01700 0.25 -0.7 335,128 - LU632_RS01700 0.26 +1.0 335,215 + LU632_RS01700 0.34 +0.5 335,227 + LU632_RS01700 0.35 -0.7 335,326 + LU632_RS01700 0.43 +2.0 335,456 + LU632_RS01700 0.55 -0.4 335,538 + LU632_RS01700 0.62 +1.4 335,538 + LU632_RS01700 0.62 +0.4 335,539 - LU632_RS01700 0.62 +2.8 335,539 - LU632_RS01700 0.62 -0.0 335,658 + LU632_RS01700 0.73 +0.5 335,658 + LU632_RS01700 0.73 +2.5 335,659 - LU632_RS01700 0.73 +0.3 335,659 - LU632_RS01700 0.73 +0.7 335,659 - LU632_RS01700 0.73 -1.6 335,686 - LU632_RS01700 0.75 +2.0 335,703 + LU632_RS01700 0.77 +0.1 335,967 + +0.5 335,968 - +1.3 336,008 - -0.4 336,008 - -0.2 336,008 - -0.3 336,008 - -1.0 336,064 + LU632_RS01705 0.22 -1.0 336,070 + LU632_RS01705 0.25 -1.7 336,124 + LU632_RS01705 0.47 -1.6 336,124 + LU632_RS01705 0.47 -1.0 336,224 + LU632_RS01705 0.87 +0.7 336,225 - LU632_RS01705 0.87 +1.8 336,241 - -0.8 336,354 - -0.6
Or see this region's nucleotide sequence