Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaA and ulaB are separated by 32 nucleotides ulaB and ulaC are separated by 190 nucleotides ulaC and LU632_RS01295 are separated by 15 nucleotides
LU632_RS01280: ulaA - PTS ascorbate transporter subunit IIC, at 266,611 to 268,020
ulaA
LU632_RS01285: ulaB - PTS ascorbate transporter subunit IIB, at 268,053 to 268,361
ulaB
LU632_RS01290: ulaC - PTS ascorbate transporter subunit IIA, at 268,552 to 269,031
ulaC
LU632_RS01295: LU632_RS01295 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 269,047 to 269,703
_RS01295
Position (kb) 268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 267.135 kb on + strand, within ulaA at 267.136 kb on - strand, within ulaA at 267.235 kb on + strand, within ulaA at 267.236 kb on - strand, within ulaA at 267.236 kb on - strand, within ulaA at 267.236 kb on - strand, within ulaA at 267.239 kb on + strand, within ulaA at 267.306 kb on + strand, within ulaA at 267.327 kb on - strand, within ulaA at 267.372 kb on + strand, within ulaA at 267.372 kb on + strand, within ulaA at 267.412 kb on + strand, within ulaA at 267.412 kb on + strand, within ulaA at 267.412 kb on + strand, within ulaA at 267.412 kb on + strand, within ulaA at 267.413 kb on - strand, within ulaA at 267.474 kb on + strand, within ulaA at 267.474 kb on + strand, within ulaA at 267.474 kb on + strand, within ulaA at 267.565 kb on + strand, within ulaA at 267.565 kb on + strand, within ulaA at 267.565 kb on + strand, within ulaA at 267.565 kb on + strand, within ulaA at 267.565 kb on + strand, within ulaA at 267.566 kb on - strand, within ulaA at 267.566 kb on - strand, within ulaA at 267.566 kb on - strand, within ulaA at 267.600 kb on + strand, within ulaA at 267.600 kb on + strand, within ulaA at 267.600 kb on + strand, within ulaA at 267.601 kb on - strand, within ulaA at 267.601 kb on - strand, within ulaA at 267.639 kb on - strand, within ulaA at 267.663 kb on + strand, within ulaA at 267.664 kb on - strand, within ulaA at 267.681 kb on + strand, within ulaA at 267.798 kb on - strand, within ulaA at 267.808 kb on - strand, within ulaA at 267.808 kb on - strand, within ulaA at 267.808 kb on - strand, within ulaA at 267.888 kb on + strand at 267.934 kb on + strand at 267.934 kb on + strand at 267.934 kb on + strand at 267.934 kb on + strand at 267.935 kb on - strand at 267.935 kb on - strand at 267.935 kb on - strand at 267.935 kb on - strand at 267.935 kb on - strand at 267.935 kb on - strand at 267.936 kb on + strand at 267.936 kb on + strand at 268.035 kb on + strand at 268.035 kb on + strand at 268.035 kb on + strand at 268.095 kb on - strand, within ulaB at 268.154 kb on - strand, within ulaB at 268.155 kb on - strand, within ulaB at 268.208 kb on + strand, within ulaB at 268.209 kb on - strand, within ulaB at 268.259 kb on + strand, within ulaB at 268.263 kb on + strand, within ulaB at 268.263 kb on + strand, within ulaB at 268.263 kb on + strand, within ulaB at 268.264 kb on - strand, within ulaB at 268.283 kb on + strand, within ulaB at 268.284 kb on - strand, within ulaB at 268.284 kb on - strand, within ulaB at 268.395 kb on + strand at 268.490 kb on - strand at 268.589 kb on + strand at 268.590 kb on - strand at 268.633 kb on - strand, within ulaC at 268.647 kb on - strand, within ulaC at 268.682 kb on - strand, within ulaC at 268.836 kb on + strand, within ulaC at 268.851 kb on + strand, within ulaC at 268.998 kb on + strand at 269.032 kb on + strand at 269.033 kb on - strand at 269.331 kb on + strand, within LU632_RS01295 at 269.331 kb on + strand, within LU632_RS01295
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 267,135 + ulaA LU632_RS01280 0.37 +2.6 267,136 - ulaA LU632_RS01280 0.37 +0.8 267,235 + ulaA LU632_RS01280 0.44 -0.4 267,236 - ulaA LU632_RS01280 0.44 +0.1 267,236 - ulaA LU632_RS01280 0.44 +0.7 267,236 - ulaA LU632_RS01280 0.44 +0.3 267,239 + ulaA LU632_RS01280 0.45 -0.7 267,306 + ulaA LU632_RS01280 0.49 +1.1 267,327 - ulaA LU632_RS01280 0.51 -1.6 267,372 + ulaA LU632_RS01280 0.54 +2.1 267,372 + ulaA LU632_RS01280 0.54 -0.7 267,412 + ulaA LU632_RS01280 0.57 -0.7 267,412 + ulaA LU632_RS01280 0.57 +0.1 267,412 + ulaA LU632_RS01280 0.57 -0.1 267,412 + ulaA LU632_RS01280 0.57 +1.0 267,413 - ulaA LU632_RS01280 0.57 +0.4 267,474 + ulaA LU632_RS01280 0.61 -0.4 267,474 + ulaA LU632_RS01280 0.61 +1.1 267,474 + ulaA LU632_RS01280 0.61 +0.3 267,565 + ulaA LU632_RS01280 0.68 -1.0 267,565 + ulaA LU632_RS01280 0.68 -1.9 267,565 + ulaA LU632_RS01280 0.68 +1.8 267,565 + ulaA LU632_RS01280 0.68 +0.5 267,565 + ulaA LU632_RS01280 0.68 -0.2 267,566 - ulaA LU632_RS01280 0.68 +0.8 267,566 - ulaA LU632_RS01280 0.68 -1.4 267,566 - ulaA LU632_RS01280 0.68 +1.6 267,600 + ulaA LU632_RS01280 0.70 -0.7 267,600 + ulaA LU632_RS01280 0.70 +0.7 267,600 + ulaA LU632_RS01280 0.70 +0.9 267,601 - ulaA LU632_RS01280 0.70 -1.1 267,601 - ulaA LU632_RS01280 0.70 -0.7 267,639 - ulaA LU632_RS01280 0.73 +0.1 267,663 + ulaA LU632_RS01280 0.75 -0.0 267,664 - ulaA LU632_RS01280 0.75 -0.4 267,681 + ulaA LU632_RS01280 0.76 -1.7 267,798 - ulaA LU632_RS01280 0.84 -2.9 267,808 - ulaA LU632_RS01280 0.85 -0.1 267,808 - ulaA LU632_RS01280 0.85 +1.1 267,808 - ulaA LU632_RS01280 0.85 -0.4 267,888 + +0.6 267,934 + -0.0 267,934 + -0.4 267,934 + +0.0 267,934 + +0.6 267,935 - +0.3 267,935 - -2.1 267,935 - +1.4 267,935 - -0.9 267,935 - -2.6 267,935 - -1.9 267,936 + +0.6 267,936 + -0.9 268,035 + +0.9 268,035 + +0.5 268,035 + -1.6 268,095 - ulaB LU632_RS01285 0.14 -0.5 268,154 - ulaB LU632_RS01285 0.33 +3.3 268,155 - ulaB LU632_RS01285 0.33 +2.2 268,208 + ulaB LU632_RS01285 0.50 -1.4 268,209 - ulaB LU632_RS01285 0.50 +1.2 268,259 + ulaB LU632_RS01285 0.67 -2.8 268,263 + ulaB LU632_RS01285 0.68 +0.1 268,263 + ulaB LU632_RS01285 0.68 -1.2 268,263 + ulaB LU632_RS01285 0.68 +0.3 268,264 - ulaB LU632_RS01285 0.68 +0.1 268,283 + ulaB LU632_RS01285 0.74 +0.1 268,284 - ulaB LU632_RS01285 0.75 +3.0 268,284 - ulaB LU632_RS01285 0.75 +0.4 268,395 + +0.6 268,490 - +0.9 268,589 + -0.4 268,590 - +0.6 268,633 - ulaC LU632_RS01290 0.17 -1.5 268,647 - ulaC LU632_RS01290 0.20 +2.5 268,682 - ulaC LU632_RS01290 0.27 -1.6 268,836 + ulaC LU632_RS01290 0.59 +0.1 268,851 + ulaC LU632_RS01290 0.62 -0.5 268,998 + -1.2 269,032 + -0.5 269,033 - +1.3 269,331 + LU632_RS01295 0.43 +1.3 269,331 + LU632_RS01295 0.43 -1.3
Or see this region's nucleotide sequence