Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00250

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
47,034	+	eptB	LU632_RS00245	0.48	-0.4
47,034	+	eptB	LU632_RS00245	0.48	+4.5
47,035	-	eptB	LU632_RS00245	0.48	-0.2
47,035	-	eptB	LU632_RS00245	0.48	+3.3
47,035	-	eptB	LU632_RS00245	0.48	+0.5
47,112	+	eptB	LU632_RS00245	0.53	-1.0
47,112	+	eptB	LU632_RS00245	0.53	+1.6
47,112	+	eptB	LU632_RS00245	0.53	-1.2
47,113	-	eptB	LU632_RS00245	0.53	-0.4
47,160	-	eptB	LU632_RS00245	0.56	-0.4
47,202	+	eptB	LU632_RS00245	0.58	-0.2
47,242	+	eptB	LU632_RS00245	0.60	-0.9
47,266	+	eptB	LU632_RS00245	0.62	+0.7
47,267	-	eptB	LU632_RS00245	0.62	+0.9
47,285	+	eptB	LU632_RS00245	0.63	-0.7
47,285	+	eptB	LU632_RS00245	0.63	-0.4
47,325	+	eptB	LU632_RS00245	0.65	-1.0
47,413	+	eptB	LU632_RS00245	0.71	+0.5
47,413	+	eptB	LU632_RS00245	0.71	-1.6
47,414	-	eptB	LU632_RS00245	0.71	-1.5
47,414	-	eptB	LU632_RS00245	0.71	+1.1
47,443	+	eptB	LU632_RS00245	0.72	+0.6
47,517	+	eptB	LU632_RS00245	0.77	-0.2
47,518	-	eptB	LU632_RS00245	0.77	-0.9
47,531	-	eptB	LU632_RS00245	0.77	-0.6
47,575	-	eptB	LU632_RS00245	0.80	+0.3
47,644	-	eptB	LU632_RS00245	0.84	-0.4
47,706	+	eptB	LU632_RS00245	0.88	+0.3
47,710	+	eptB	LU632_RS00245	0.88	+0.4
47,711	-	eptB	LU632_RS00245	0.88	+0.0
47,805	+				+0.2
47,806	-				+0.8
47,806	-				-1.3
47,806	-				+0.4
47,824	+				-1.2
47,825	-				-0.7
47,826	+				-0.8
47,827	-				-0.3
47,833	-				-0.7
47,833	-				+0.9
47,947	+				-1.9
48,064	-				+1.1
48,064	-				-2.0
48,164	-				+1.2
48,216	+	cirA	LU632_RS00250	0.11	-1.2
48,216	+	cirA	LU632_RS00250	0.11	-0.7
48,307	+	cirA	LU632_RS00250	0.15	+0.6
48,342	+	cirA	LU632_RS00250	0.17	+0.7
48,343	-	cirA	LU632_RS00250	0.17	+0.6
48,343	-	cirA	LU632_RS00250	0.17	+0.0
48,347	-	cirA	LU632_RS00250	0.17	-1.0
48,348	+	cirA	LU632_RS00250	0.17	-1.6
48,349	-	cirA	LU632_RS00250	0.17	-0.3
48,432	+	cirA	LU632_RS00250	0.22	+0.8
48,432	+	cirA	LU632_RS00250	0.22	+0.2
48,432	+	cirA	LU632_RS00250	0.22	-1.0
48,432	+	cirA	LU632_RS00250	0.22	-0.7
48,433	-	cirA	LU632_RS00250	0.22	+0.0
48,433	-	cirA	LU632_RS00250	0.22	+0.0
48,591	+	cirA	LU632_RS00250	0.30	+2.6
48,591	+	cirA	LU632_RS00250	0.30	-0.7
48,652	+	cirA	LU632_RS00250	0.33	+1.5
48,801	+	cirA	LU632_RS00250	0.40	-0.1
48,982	-	cirA	LU632_RS00250	0.50	+0.0
49,087	+	cirA	LU632_RS00250	0.55	+0.8
49,087	+	cirA	LU632_RS00250	0.55	-1.6
49,087	+	cirA	LU632_RS00250	0.55	-0.7
49,087	+	cirA	LU632_RS00250	0.55	-0.2
49,126	-	cirA	LU632_RS00250	0.57	-0.2
49,154	+	cirA	LU632_RS00250	0.58	-1.6
49,355	+	cirA	LU632_RS00250	0.69	+0.6
49,484	-	cirA	LU632_RS00250	0.75	-1.2
49,544	+	cirA	LU632_RS00250	0.78	-1.9
49,552	+	cirA	LU632_RS00250	0.79	+1.2
49,654	+	cirA	LU632_RS00250	0.84	+1.1
49,951	+				-1.1
49,988	-				+0.4
50,019	-				+0.1
50,065	-				+2.2
50,067	-				+0.9
50,067	-				-1.6
50,154	+		LU632_RS00255	0.12	+0.4
50,154	+		LU632_RS00255	0.12	-0.4
50,154	+		LU632_RS00255	0.12	-1.0
50,155	-		LU632_RS00255	0.12	+0.4
50,155	-		LU632_RS00255	0.12	-1.4
50,171	+		LU632_RS00255	0.13	+0.4
50,172	-		LU632_RS00255	0.13	+0.5
50,175	+		LU632_RS00255	0.14	+0.5
50,605	-		LU632_RS00255	0.51	-1.0
50,607	-		LU632_RS00255	0.51	+3.7
50,607	-		LU632_RS00255	0.51	-0.6
50,686	-		LU632_RS00255	0.58	+0.3
50,771	-		LU632_RS00255	0.65	-1.0
50,771	-		LU632_RS00255	0.65	+1.7
50,864	-		LU632_RS00255	0.74	+0.9