Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25330

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS25330 and LU632_RS25335 overlap by 59 nucleotides LU632_RS25330: LU632_RS25330 - DUF5710 domain-containing protein, at 214 to 840 _RS25330 LU632_RS25335: LU632_RS25335 - hypothetical protein, at 782 to 3,604 _RS25335 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 0.045 kb on + strandat 0.072 kb on + strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.210 kb on - strandat 0.210 kb on - strandat 0.210 kb on - strandat 0.213 kb on + strandat 0.226 kb on - strandat 0.230 kb on - strandat 0.238 kb on - strandat 0.238 kb on - strandat 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.310 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.562 kb on + strand, within LU632_RS25330at 0.562 kb on + strand, within LU632_RS25330at 0.598 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.722 kb on + strand, within LU632_RS25330at 0.722 kb on + strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.809 kb on + strandat 0.810 kb on - strandat 0.857 kb on - strandat 0.861 kb on - strandat 0.861 kb on - strandat 0.861 kb on - strandat 0.883 kb on - strandat 0.883 kb on - strandat 0.887 kb on - strandat 0.887 kb on - strandat 0.917 kb on + strandat 0.917 kb on + strandat 0.918 kb on - strandat 0.918 kb on - strandat 1.032 kb on - strandat 1.050 kb on + strandat 1.051 kb on - strandat 1.256 kb on + strand, within LU632_RS25335at 1.257 kb on - strand, within LU632_RS25335at 1.334 kb on - strand, within LU632_RS25335at 1.420 kb on + strand, within LU632_RS25335at 1.517 kb on - strand, within LU632_RS25335at 1.546 kb on + strand, within LU632_RS25335at 1.546 kb on + strand, within LU632_RS25335at 1.547 kb on - strand, within LU632_RS25335at 1.547 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.716 kb on + strand, within LU632_RS25335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA
remove
45 + +0.6
72 + +0.5
209 + +0.5
209 + -0.1
209 + -1.7
210 - -0.9
210 - +0.9
210 - +0.7
213 + +0.4
226 - -1.9
230 - -2.2
238 - +1.2
238 - +0.4
298 + LU632_RS25330 0.13 +1.9
298 + LU632_RS25330 0.13 -1.8
298 + LU632_RS25330 0.13 -0.1
298 + LU632_RS25330 0.13 +5.1
299 - LU632_RS25330 0.14 +2.0
299 - LU632_RS25330 0.14 +0.2
299 - LU632_RS25330 0.14 -2.4
299 - LU632_RS25330 0.14 -0.9
299 - LU632_RS25330 0.14 +0.5
299 - LU632_RS25330 0.14 -1.9
310 + LU632_RS25330 0.15 -2.3
560 + LU632_RS25330 0.55 +1.8
560 + LU632_RS25330 0.55 +0.2
560 + LU632_RS25330 0.55 +1.7
560 + LU632_RS25330 0.55 -0.7
561 - LU632_RS25330 0.55 +0.8
561 - LU632_RS25330 0.55 -0.4
561 - LU632_RS25330 0.55 -0.5
562 + LU632_RS25330 0.56 +1.8
562 + LU632_RS25330 0.56 -2.6
598 + LU632_RS25330 0.61 +1.4
658 + LU632_RS25330 0.71 -0.2
658 + LU632_RS25330 0.71 -0.5
658 + LU632_RS25330 0.71 -0.8
659 - LU632_RS25330 0.71 +0.2
659 - LU632_RS25330 0.71 +0.7
659 - LU632_RS25330 0.71 -0.7
722 + LU632_RS25330 0.81 +0.3
722 + LU632_RS25330 0.81 +0.4
723 - LU632_RS25330 0.81 -1.0
723 - LU632_RS25330 0.81 -1.1
723 - LU632_RS25330 0.81 +0.5
809 + -1.0
810 - +0.5
857 - +2.0
861 - -0.4
861 - -1.8
861 - -1.2
883 - +0.3
883 - +0.1
887 - +0.5
887 - -2.1
917 + -1.0
917 + -1.1
918 - -1.4
918 - -0.3
1,032 - -0.7
1,050 + +0.7
1,051 - -0.5
1,256 + LU632_RS25335 0.17 +1.2
1,257 - LU632_RS25335 0.17 -2.1
1,334 - LU632_RS25335 0.20 -1.7
1,420 + LU632_RS25335 0.23 -0.1
1,517 - LU632_RS25335 0.26 +2.6
1,546 + LU632_RS25335 0.27 -1.1
1,546 + LU632_RS25335 0.27 +0.4
1,547 - LU632_RS25335 0.27 +0.7
1,547 - LU632_RS25335 0.27 +0.1
1,549 - LU632_RS25335 0.27 -1.7
1,549 - LU632_RS25335 0.27 +0.1
1,549 - LU632_RS25335 0.27 +1.3
1,668 + LU632_RS25335 0.31 +0.6
1,668 + LU632_RS25335 0.31 -1.9
1,668 + LU632_RS25335 0.31 +0.9
1,668 + LU632_RS25335 0.31 +0.1
1,668 + LU632_RS25335 0.31 -1.1
1,669 - LU632_RS25335 0.31 -0.3
1,669 - LU632_RS25335 0.31 +1.7
1,669 - LU632_RS25335 0.31 +0.5
1,669 - LU632_RS25335 0.31 -3.3
1,716 + LU632_RS25335 0.33 +4.0

Or see this region's nucleotide sequence