Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25265

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
4,804,662	+	gspJ	LU632_RS25255	0.83	+1.7
4,804,981	-		LU632_RS25260	0.25	-0.7
4,805,130	+		LU632_RS25260	0.42	+0.7
4,805,131	-		LU632_RS25260	0.42	+0.2
4,805,131	-		LU632_RS25260	0.42	-0.3
4,805,131	-		LU632_RS25260	0.42	+0.7
4,805,132	+		LU632_RS25260	0.42	+0.3
4,805,132	+		LU632_RS25260	0.42	-2.1
4,805,132	+		LU632_RS25260	0.42	+1.7
4,805,132	+		LU632_RS25260	0.42	-0.2
4,805,132	+		LU632_RS25260	0.42	-1.7
4,805,132	+		LU632_RS25260	0.42	-0.5
4,805,132	+		LU632_RS25260	0.42	+1.7
4,805,133	-		LU632_RS25260	0.42	-1.5
4,805,133	-		LU632_RS25260	0.42	-1.4
4,805,395	-		LU632_RS25260	0.71	-0.1
4,805,590	+				+0.2
4,805,591	-				-1.4
4,805,599	+				+0.7
4,805,621	+				+1.3
4,805,621	+				-2.2
4,805,621	+				-0.3
4,805,621	+				+0.5
4,805,621	+				+1.8
4,805,621	+				-1.3
4,805,622	-				+1.1
4,805,702	-				-0.7
4,805,870	-	gspL	LU632_RS25265	0.18	-0.7
4,805,968	+	gspL	LU632_RS25265	0.26	-1.7
4,806,260	-	gspL	LU632_RS25265	0.51	-0.3
4,806,260	-	gspL	LU632_RS25265	0.51	+0.4
4,806,359	+	gspL	LU632_RS25265	0.59	+1.9
4,806,360	-	gspL	LU632_RS25265	0.59	+1.3
4,806,360	-	gspL	LU632_RS25265	0.59	-0.1
4,806,452	+	gspL	LU632_RS25265	0.67	+1.5
4,806,511	+	gspL	LU632_RS25265	0.72	-0.9
4,806,512	-	gspL	LU632_RS25265	0.72	-1.1
4,806,512	-	gspL	LU632_RS25265	0.72	-1.3
4,806,512	-	gspL	LU632_RS25265	0.72	-2.0
4,806,513	+	gspL	LU632_RS25265	0.72	-0.8
4,806,513	+	gspL	LU632_RS25265	0.72	-0.0
4,806,513	+	gspL	LU632_RS25265	0.72	+0.1
4,806,513	+	gspL	LU632_RS25265	0.72	-0.1
4,806,514	-	gspL	LU632_RS25265	0.72	+0.3
4,806,515	+	gspL	LU632_RS25265	0.72	-1.7
4,806,515	+	gspL	LU632_RS25265	0.72	+0.2
4,806,515	+	gspL	LU632_RS25265	0.72	+1.0
4,806,515	+	gspL	LU632_RS25265	0.72	-0.7
4,806,516	-	gspL	LU632_RS25265	0.72	-1.3
4,806,516	-	gspL	LU632_RS25265	0.72	+0.7
4,806,516	-	gspL	LU632_RS25265	0.72	+0.1
4,806,516	-	gspL	LU632_RS25265	0.72	-0.1
4,806,516	-	gspL	LU632_RS25265	0.72	+0.6
4,806,516	-	gspL	LU632_RS25265	0.72	+0.2
4,806,516	-	gspL	LU632_RS25265	0.72	-1.3
4,806,516	-	gspL	LU632_RS25265	0.72	+1.7
4,806,516	-	gspL	LU632_RS25265	0.72	-0.2
4,806,590	+	gspL	LU632_RS25265	0.78	+0.9
4,806,592	+	gspL	LU632_RS25265	0.78	+0.0
4,806,592	+	gspL	LU632_RS25265	0.78	-0.3
4,806,593	-	gspL	LU632_RS25265	0.78	+1.7
4,806,593	-	gspL	LU632_RS25265	0.78	+0.7
4,806,782	-				+0.7
4,806,813	-				-0.0
4,806,845	+				+0.2
4,806,855	-				+0.2
4,806,894	+		LU632_RS25270	0.12	-1.1
4,807,035	+		LU632_RS25270	0.43	+0.7
4,807,035	+		LU632_RS25270	0.43	+0.2
4,807,128	+		LU632_RS25270	0.64	+0.3
4,807,285	+				-1.6
4,807,285	+				+0.1
4,807,286	-				-0.7
4,807,300	-				-0.7
4,807,300	-				+1.7
4,807,413	-		LU632_RS25275	0.16	-0.7
4,807,462	+		LU632_RS25275	0.23	-0.4
4,807,471	-		LU632_RS25275	0.24	-0.9
4,807,471	-		LU632_RS25275	0.24	-0.2
4,807,483	-		LU632_RS25275	0.25	+1.1
4,807,483	-		LU632_RS25275	0.25	+1.7
4,807,623	+		LU632_RS25275	0.43	-0.7
4,807,623	+		LU632_RS25275	0.43	+0.4
4,807,623	+		LU632_RS25275	0.43	-0.7
4,807,623	+		LU632_RS25275	0.43	+1.2
4,807,624	-		LU632_RS25275	0.44	+0.4
4,807,631	-		LU632_RS25275	0.44	+0.7
4,807,631	-		LU632_RS25275	0.44	+0.3
4,807,828	+		LU632_RS25275	0.70	+0.4