Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24830

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
4,731,418	+				-1.2
4,731,418	+				+0.4
4,731,419	-				+1.4
4,731,422	+				+0.4
4,731,423	-				+0.9
4,731,430	+				+0.0
4,731,430	+				-0.3
4,731,431	-				+0.5
4,731,437	+				-0.8
4,731,523	+				+0.3
4,731,541	+				-0.7
4,731,541	+				+0.1
4,731,616	+	viaA	LU632_RS24830	0.10	-1.8
4,731,664	+	viaA	LU632_RS24830	0.13	-0.9
4,731,664	+	viaA	LU632_RS24830	0.13	-0.0
4,731,669	-	viaA	LU632_RS24830	0.14	-0.4
4,731,811	-	viaA	LU632_RS24830	0.23	+0.0
4,731,811	-	viaA	LU632_RS24830	0.23	-1.7
4,731,952	+	viaA	LU632_RS24830	0.33	-0.4
4,731,953	-	viaA	LU632_RS24830	0.33	-0.4
4,732,041	+	viaA	LU632_RS24830	0.39	-1.1
4,732,042	-	viaA	LU632_RS24830	0.39	+0.7
4,732,346	+	viaA	LU632_RS24830	0.60	-0.7
4,732,535	+	viaA	LU632_RS24830	0.73	-0.5
4,732,582	+	viaA	LU632_RS24830	0.76	-1.2
4,732,582	+	viaA	LU632_RS24830	0.76	-2.2
4,732,638	+	viaA	LU632_RS24830	0.80	-0.3
4,732,661	+	viaA	LU632_RS24830	0.82	+1.8
4,732,661	+	viaA	LU632_RS24830	0.82	+0.1
4,732,910	+				+0.4
4,732,910	+				+0.1
4,732,911	-				-0.7
4,733,178	+	ravA	LU632_RS24835	0.17	-0.6
4,733,184	+	ravA	LU632_RS24835	0.17	+1.0
4,733,185	-	ravA	LU632_RS24835	0.17	+0.5
4,733,233	+	ravA	LU632_RS24835	0.20	+1.0
4,733,234	-	ravA	LU632_RS24835	0.21	+0.1
4,733,302	-	ravA	LU632_RS24835	0.25	+0.5
4,733,302	-	ravA	LU632_RS24835	0.25	+0.6
4,733,302	-	ravA	LU632_RS24835	0.25	+0.3
4,733,560	+	ravA	LU632_RS24835	0.42	-1.1
4,733,560	+	ravA	LU632_RS24835	0.42	-2.0
4,733,560	+	ravA	LU632_RS24835	0.42	+0.5
4,733,560	+	ravA	LU632_RS24835	0.42	+0.3
4,733,560	+	ravA	LU632_RS24835	0.42	+0.2
4,733,560	+	ravA	LU632_RS24835	0.42	+2.3
4,733,560	+	ravA	LU632_RS24835	0.42	+0.9
4,733,561	-	ravA	LU632_RS24835	0.42	-0.2
4,733,561	-	ravA	LU632_RS24835	0.42	-1.4
4,733,561	-	ravA	LU632_RS24835	0.42	+0.9
4,733,628	-	ravA	LU632_RS24835	0.47	-0.7
4,733,682	+	ravA	LU632_RS24835	0.51	+0.5
4,733,684	+	ravA	LU632_RS24835	0.51	-0.4
4,733,789	+	ravA	LU632_RS24835	0.58	+0.2
4,733,805	+	ravA	LU632_RS24835	0.59	+1.2