Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24640

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
4,693,301	-		LU632_RS24630	0.53	+0.5
4,693,301	-		LU632_RS24630	0.53	+6.9
4,693,445	+		LU632_RS24630	0.72	-0.3
4,693,445	+		LU632_RS24630	0.72	-0.7
4,693,564	-		LU632_RS24630	0.88	+0.2
4,693,702	-				-0.9
4,693,736	+				-0.9
4,693,737	-				-0.3
4,693,740	-				+2.1
4,693,821	+				+0.1
4,693,875	-		LU632_RS24635	0.15	+1.2
4,693,891	+		LU632_RS24635	0.19	+0.9
4,693,946	-		LU632_RS24635	0.32	+0.0
4,693,946	-		LU632_RS24635	0.32	+0.3
4,693,948	-		LU632_RS24635	0.32	+1.9
4,693,961	+		LU632_RS24635	0.35	-0.5
4,693,961	+		LU632_RS24635	0.35	+1.1
4,693,962	-		LU632_RS24635	0.35	+0.8
4,693,962	-		LU632_RS24635	0.35	-0.3
4,693,994	-		LU632_RS24635	0.43	-0.0
4,694,020	+		LU632_RS24635	0.49	+0.1
4,694,136	+		LU632_RS24635	0.75	-0.7
4,694,137	-		LU632_RS24635	0.76	-1.3
4,694,137	-		LU632_RS24635	0.76	+0.3
4,694,139	+		LU632_RS24635	0.76	+0.1
4,694,140	-		LU632_RS24635	0.76	-2.1
4,694,169	+		LU632_RS24635	0.83	+0.2
4,694,170	-		LU632_RS24635	0.83	+1.6
4,694,216	+				+0.6
4,694,217	-				+1.0
4,694,217	-				+0.1
4,694,273	-				-1.1
4,694,338	+		LU632_RS24640	0.14	+0.8
4,694,339	-		LU632_RS24640	0.14	-0.0
4,694,371	-		LU632_RS24640	0.19	-0.4
4,694,427	+		LU632_RS24640	0.27	+1.7
4,694,457	-		LU632_RS24640	0.31	+2.5
4,694,459	+		LU632_RS24640	0.31	+0.9
4,694,640	+		LU632_RS24640	0.57	-0.3
4,694,718	+		LU632_RS24640	0.68	-0.7
4,694,719	-		LU632_RS24640	0.68	+2.3
4,694,762	+		LU632_RS24640	0.74	+1.7
4,694,763	-		LU632_RS24640	0.74	+0.3
4,694,774	+		LU632_RS24640	0.76	+1.1
4,694,774	+		LU632_RS24640	0.76	+0.1
4,694,774	+		LU632_RS24640	0.76	+0.8
4,694,816	-		LU632_RS24640	0.82	+3.6
4,694,877	+				-0.3
4,694,877	+				-0.9
4,694,895	+				+0.3
4,694,895	+				+0.1
4,695,025	+				-2.0
4,695,025	+				+1.2
4,695,026	-				-1.1
4,695,027	+				+0.9
4,695,027	+				+0.1
4,695,027	+				-0.2
4,695,027	+				+1.3
4,695,027	+				-1.7
4,695,027	+				+0.3
4,695,028	-				-0.3
4,695,028	-				+0.1
4,695,028	-				+0.3
4,695,030	+				-0.7
4,695,030	+				-2.1
4,695,030	+				+0.7
4,695,031	-				+0.5
4,695,031	-				+0.7
4,695,050	+				-1.9
4,695,090	-				-0.6
4,695,090	-				-0.4
4,695,155	-		LU632_RS24645	0.35	-1.1
4,695,260	-		LU632_RS24645	0.85	+0.8
4,695,356	+				+1.3
4,695,388	-				-0.4
4,695,394	-				-0.7
4,695,394	-				+0.9
4,695,394	-				+1.0
4,695,394	-				-0.3
4,695,433	-				-0.4
4,695,447	-				+0.4