Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21570 and LU632_RS21575 are separated by 136 nucleotides LU632_RS21575 and LU632_RS21580 are separated by 44 nucleotides LU632_RS21580 and traF are separated by 52 nucleotides traF and traN are separated by 273 nucleotides
LU632_RS21570: LU632_RS21570 - pyridoxamine 5'-phosphate oxidase family protein, at 4,128,723 to 4,129,247
_RS21570
LU632_RS21575: LU632_RS21575 - Rpn family recombination-promoting nuclease/putative transposase, at 4,129,384 to 4,129,754
_RS21575
LU632_RS21580: LU632_RS21580 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,129,799 to 4,130,080
_RS21580
LU632_RS21585: traF - conjugal transfer protein TraF, at 4,130,133 to 4,130,621
traF
LU632_RS21590: traN - conjugal transfer protein TraN, at 4,130,895 to 4,131,238
traN
Position (kb) 4129
4130
4131 Strain fitness (log2 ratio) -2
-1
0
1 at 4128.826 kb on - strand, within LU632_RS21570 at 4128.901 kb on + strand, within LU632_RS21570 at 4128.902 kb on - strand, within LU632_RS21570 at 4128.902 kb on - strand, within LU632_RS21570 at 4129.022 kb on + strand, within LU632_RS21570 at 4129.023 kb on - strand, within LU632_RS21570 at 4129.023 kb on - strand, within LU632_RS21570 at 4129.035 kb on + strand, within LU632_RS21570 at 4129.036 kb on - strand, within LU632_RS21570 at 4129.036 kb on - strand, within LU632_RS21570 at 4129.061 kb on - strand, within LU632_RS21570 at 4129.091 kb on - strand, within LU632_RS21570 at 4129.091 kb on - strand, within LU632_RS21570 at 4129.162 kb on + strand, within LU632_RS21570 at 4129.251 kb on + strand at 4129.254 kb on + strand at 4129.275 kb on + strand at 4129.275 kb on + strand at 4129.275 kb on + strand at 4129.276 kb on - strand at 4129.276 kb on - strand at 4129.354 kb on + strand at 4129.452 kb on + strand, within LU632_RS21575 at 4129.611 kb on + strand, within LU632_RS21575 at 4129.612 kb on - strand, within LU632_RS21575 at 4129.612 kb on - strand, within LU632_RS21575 at 4129.678 kb on - strand, within LU632_RS21575 at 4129.718 kb on + strand at 4129.791 kb on - strand at 4129.806 kb on - strand at 4129.858 kb on + strand, within LU632_RS21580 at 4129.989 kb on - strand, within LU632_RS21580 at 4129.989 kb on - strand, within LU632_RS21580 at 4130.127 kb on - strand at 4130.160 kb on - strand at 4130.219 kb on + strand, within traF at 4130.222 kb on + strand, within traF at 4130.222 kb on + strand, within traF at 4130.223 kb on - strand, within traF at 4130.223 kb on - strand, within traF at 4130.265 kb on + strand, within traF at 4130.304 kb on - strand, within traF at 4130.304 kb on - strand, within traF at 4130.416 kb on + strand, within traF at 4130.417 kb on - strand, within traF at 4130.496 kb on + strand, within traF at 4130.918 kb on + strand at 4130.918 kb on + strand at 4130.918 kb on + strand at 4130.933 kb on + strand, within traN at 4131.014 kb on + strand, within traN
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 4,128,826 - LU632_RS21570 0.20 +1.3 4,128,901 + LU632_RS21570 0.34 +0.2 4,128,902 - LU632_RS21570 0.34 +0.8 4,128,902 - LU632_RS21570 0.34 -1.8 4,129,022 + LU632_RS21570 0.57 +1.2 4,129,023 - LU632_RS21570 0.57 -0.4 4,129,023 - LU632_RS21570 0.57 -0.4 4,129,035 + LU632_RS21570 0.59 +0.2 4,129,036 - LU632_RS21570 0.60 +0.3 4,129,036 - LU632_RS21570 0.60 -0.1 4,129,061 - LU632_RS21570 0.64 +0.4 4,129,091 - LU632_RS21570 0.70 +0.2 4,129,091 - LU632_RS21570 0.70 +1.3 4,129,162 + LU632_RS21570 0.84 -0.2 4,129,251 + -1.2 4,129,254 + -1.0 4,129,275 + +1.6 4,129,275 + +0.4 4,129,275 + -0.6 4,129,276 - +0.8 4,129,276 - +0.6 4,129,354 + +0.0 4,129,452 + LU632_RS21575 0.18 +0.3 4,129,611 + LU632_RS21575 0.61 -0.2 4,129,612 - LU632_RS21575 0.61 +0.4 4,129,612 - LU632_RS21575 0.61 +0.5 4,129,678 - LU632_RS21575 0.79 -0.4 4,129,718 + -0.0 4,129,791 - -1.0 4,129,806 - +0.1 4,129,858 + LU632_RS21580 0.21 -1.8 4,129,989 - LU632_RS21580 0.67 -0.0 4,129,989 - LU632_RS21580 0.67 -2.0 4,130,127 - +0.5 4,130,160 - -0.3 4,130,219 + traF LU632_RS21585 0.18 +1.5 4,130,222 + traF LU632_RS21585 0.18 +0.6 4,130,222 + traF LU632_RS21585 0.18 +0.0 4,130,223 - traF LU632_RS21585 0.18 -1.2 4,130,223 - traF LU632_RS21585 0.18 +0.1 4,130,265 + traF LU632_RS21585 0.27 +0.2 4,130,304 - traF LU632_RS21585 0.35 +1.3 4,130,304 - traF LU632_RS21585 0.35 -1.1 4,130,416 + traF LU632_RS21585 0.58 -1.1 4,130,417 - traF LU632_RS21585 0.58 -1.8 4,130,496 + traF LU632_RS21585 0.74 -0.2 4,130,918 + -0.2 4,130,918 + -0.8 4,130,918 + +1.0 4,130,933 + traN LU632_RS21590 0.11 -0.1 4,131,014 + traN LU632_RS21590 0.35 +0.1
Or see this region's nucleotide sequence