Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21265

Experiment: plant=Melon; plant sample=MP1; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkdsD and kdsC are separated by 15 nucleotideskdsC and lptC overlap by 4 nucleotideslptC and lptA overlap by 29 nucleotideslptA and lptB are separated by 10 nucleotides LU632_RS21255: kdsD - arabinose-5-phosphate isomerase KdsD, at 4,058,706 to 4,059,692 kdsD LU632_RS21260: kdsC - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 4,059,708 to 4,060,274 kdsC LU632_RS21265: lptC - LPS export ABC transporter periplasmic protein LptC, at 4,060,271 to 4,060,846 lptC LU632_RS21270: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 4,060,818 to 4,061,366 lptA LU632_RS21275: lptB - LPS export ABC transporter ATP-binding protein, at 4,061,377 to 4,062,102 lptB Position (kb) 4060 4061Strain fitness (log2 ratio) -2 -1 0 1 2at 4059.700 kb on + strandat 4059.700 kb on + strandat 4060.071 kb on + strand, within kdsCat 4060.071 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.073 kb on + strand, within kdsCat 4060.166 kb on + strand, within kdsCat 4060.170 kb on + strand, within kdsCat 4060.170 kb on + strand, within kdsCat 4060.170 kb on + strand, within kdsCat 4061.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA
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4,059,700 + +0.7
4,059,700 + -0.7
4,060,071 + kdsC LU632_RS21260 0.64 +0.2
4,060,071 + kdsC LU632_RS21260 0.64 +2.6
4,060,073 + kdsC LU632_RS21260 0.64 -0.2
4,060,073 + kdsC LU632_RS21260 0.64 -2.3
4,060,073 + kdsC LU632_RS21260 0.64 +1.2
4,060,073 + kdsC LU632_RS21260 0.64 -1.0
4,060,073 + kdsC LU632_RS21260 0.64 -0.9
4,060,073 + kdsC LU632_RS21260 0.64 -0.6
4,060,073 + kdsC LU632_RS21260 0.64 +0.6
4,060,166 + kdsC LU632_RS21260 0.81 -0.4
4,060,170 + kdsC LU632_RS21260 0.81 +0.6
4,060,170 + kdsC LU632_RS21260 0.81 -1.9
4,060,170 + kdsC LU632_RS21260 0.81 +1.6
4,061,364 + -0.8

Or see this region's nucleotide sequence