Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20565

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
3,914,758	+				-0.4
3,914,758	+				+0.1
3,915,151	-		LU632_RS20560	0.78	+1.1
3,915,165	+		LU632_RS20560	0.80	-0.9
3,915,165	+		LU632_RS20560	0.80	-2.2
3,915,166	-		LU632_RS20560	0.80	-2.0
3,915,166	-		LU632_RS20560	0.80	+1.4
3,915,200	-		LU632_RS20560	0.87	+1.5
3,915,304	+				-0.9
3,915,318	-				-2.2
3,915,331	+				+1.3
3,915,410	+				+0.2
3,915,527	-				+0.3
3,915,840	-		LU632_RS20565	0.34	+0.1
3,915,873	+		LU632_RS20565	0.46	+0.8
3,915,940	+		LU632_RS20565	0.71	+0.5
3,915,940	+		LU632_RS20565	0.71	+0.5
3,915,941	-		LU632_RS20565	0.71	-0.3
3,915,944	+		LU632_RS20565	0.72	-2.3
3,916,048	+				-1.6
3,916,056	-				+1.1
3,916,144	+				-0.5
3,916,252	+				-0.7
3,916,252	+				+1.6
3,916,253	-				-0.3
3,916,283	+				+0.3
3,916,283	+				-0.0
3,916,284	-				-0.5
3,916,300	+				-0.6
3,916,395	+				-0.0
3,916,469	-				+2.1
3,916,469	-				+0.8
3,916,469	-				+3.6
3,916,472	+				-0.2
3,916,473	-				+1.6
3,916,503	-				-0.4
3,916,571	+	ftsP	LU632_RS20570	0.12	+2.1
3,916,646	-	ftsP	LU632_RS20570	0.18	+0.4
3,916,663	+	ftsP	LU632_RS20570	0.19	+1.7
3,916,663	+	ftsP	LU632_RS20570	0.19	-0.6
3,916,663	+	ftsP	LU632_RS20570	0.19	-0.6
3,916,664	-	ftsP	LU632_RS20570	0.19	+2.6
3,916,664	-	ftsP	LU632_RS20570	0.19	-1.2
3,916,667	+	ftsP	LU632_RS20570	0.19	-1.1
3,916,668	-	ftsP	LU632_RS20570	0.19	-0.3
3,916,794	+	ftsP	LU632_RS20570	0.28	+2.7