Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20050

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
3,815,874	+	fhuB	LU632_RS20045	0.50	+1.7
3,816,018	+	fhuB	LU632_RS20045	0.58	-0.4
3,816,022	-	fhuB	LU632_RS20045	0.58	+0.5
3,816,022	-	fhuB	LU632_RS20045	0.58	-0.4
3,816,123	-	fhuB	LU632_RS20045	0.63	+0.8
3,816,270	+	fhuB	LU632_RS20045	0.71	-0.0
3,816,311	+	fhuB	LU632_RS20045	0.73	+0.3
3,816,311	+	fhuB	LU632_RS20045	0.73	+0.3
3,816,390	+	fhuB	LU632_RS20045	0.77	-1.2
3,816,391	-	fhuB	LU632_RS20045	0.77	+2.3
3,816,391	-	fhuB	LU632_RS20045	0.77	-0.7
3,816,412	+	fhuB	LU632_RS20045	0.78	+0.7
3,816,563	+	fhuB	LU632_RS20045	0.86	+1.3
3,816,563	+	fhuB	LU632_RS20045	0.86	-0.5
3,816,564	-	fhuB	LU632_RS20045	0.86	-0.9
3,816,564	-	fhuB	LU632_RS20045	0.86	-0.2
3,816,564	-	fhuB	LU632_RS20045	0.86	+1.9
3,816,564	-	fhuB	LU632_RS20045	0.86	-0.7
3,816,564	-	fhuB	LU632_RS20045	0.86	+1.4
3,816,567	+	fhuB	LU632_RS20045	0.86	-2.2
3,816,567	+	fhuB	LU632_RS20045	0.86	+2.2
3,816,568	-	fhuB	LU632_RS20045	0.86	-0.8
3,816,568	-	fhuB	LU632_RS20045	0.86	-1.6
3,816,568	-	fhuB	LU632_RS20045	0.86	+2.9
3,817,277	-	fhuD	LU632_RS20050	0.46	-1.2
3,817,343	+	fhuD	LU632_RS20050	0.53	-1.4
3,817,344	-	fhuD	LU632_RS20050	0.54	-0.7
3,817,429	+	fhuD	LU632_RS20050	0.63	-1.0
3,817,502	-	fhuD	LU632_RS20050	0.71	-0.9
3,817,502	-	fhuD	LU632_RS20050	0.71	-0.1
3,817,743	+				-0.4
3,817,744	-				+1.6
3,817,744	-				+0.1
3,817,791	+				-0.0
3,817,791	+				-0.7
3,817,833	-				+0.1
3,817,939	-	fhuC	LU632_RS20055	0.22	-0.7
3,817,941	+	fhuC	LU632_RS20055	0.22	+1.1
3,817,941	+	fhuC	LU632_RS20055	0.22	+1.3
3,817,942	-	fhuC	LU632_RS20055	0.22	-1.1
3,817,942	-	fhuC	LU632_RS20055	0.22	-0.9
3,817,942	-	fhuC	LU632_RS20055	0.22	-0.5
3,817,955	-	fhuC	LU632_RS20055	0.24	+0.6
3,818,235	-	fhuC	LU632_RS20055	0.59	-1.0
3,818,301	-	fhuC	LU632_RS20055	0.67	-0.3
3,818,549	+				+1.6
3,818,605	+				-1.4
3,818,606	-				-0.4
3,818,606	-				-0.4
3,818,608	-				-0.2
3,818,677	+				-0.7
3,818,681	+				+0.7