Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19845

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
3,769,921	+	rcsF	LU632_RS19835	0.63	+0.3
3,769,958	-	rcsF	LU632_RS19835	0.73	+0.1
3,769,958	-	rcsF	LU632_RS19835	0.73	+0.6
3,769,995	+	rcsF	LU632_RS19835	0.82	+1.6
3,769,996	-	rcsF	LU632_RS19835	0.82	-0.1
3,770,148	+	tsaA	LU632_RS19840	0.12	+0.5
3,770,177	+	tsaA	LU632_RS19840	0.16	+0.6
3,770,177	+	tsaA	LU632_RS19840	0.16	+0.2
3,770,188	+	tsaA	LU632_RS19840	0.17	-0.2
3,770,188	+	tsaA	LU632_RS19840	0.17	+1.6
3,770,232	+	tsaA	LU632_RS19840	0.24	-0.4
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.1
3,770,232	+	tsaA	LU632_RS19840	0.24	-1.4
3,770,232	+	tsaA	LU632_RS19840	0.24	-2.4
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.2
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.3
3,770,232	+	tsaA	LU632_RS19840	0.24	+0.2
3,770,232	+	tsaA	LU632_RS19840	0.24	-0.8
3,770,233	-	tsaA	LU632_RS19840	0.24	+0.5
3,770,233	-	tsaA	LU632_RS19840	0.24	-0.5
3,770,233	-	tsaA	LU632_RS19840	0.24	-0.0
3,770,233	-	tsaA	LU632_RS19840	0.24	-0.2
3,770,233	-	tsaA	LU632_RS19840	0.24	-0.6
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.6
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.1
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.7
3,770,234	+	tsaA	LU632_RS19840	0.24	+0.4
3,770,234	+	tsaA	LU632_RS19840	0.24	-1.6
3,770,234	+	tsaA	LU632_RS19840	0.24	+2.0
3,770,234	+	tsaA	LU632_RS19840	0.24	-2.0
3,770,235	-	tsaA	LU632_RS19840	0.24	+0.9
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.7
3,770,235	-	tsaA	LU632_RS19840	0.24	+0.3
3,770,235	-	tsaA	LU632_RS19840	0.24	+0.6
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.1
3,770,235	-	tsaA	LU632_RS19840	0.24	-0.8
3,770,235	-	tsaA	LU632_RS19840	0.24	-2.1
3,770,235	-	tsaA	LU632_RS19840	0.24	-2.7
3,770,263	-	tsaA	LU632_RS19840	0.28	-2.3
3,770,322	-	tsaA	LU632_RS19840	0.36	+0.3
3,770,469	+	tsaA	LU632_RS19840	0.57	-0.8
3,770,476	+	tsaA	LU632_RS19840	0.58	-1.3
3,770,535	+	tsaA	LU632_RS19840	0.66	-1.0
3,770,535	+	tsaA	LU632_RS19840	0.66	-1.1
3,770,535	+	tsaA	LU632_RS19840	0.66	+0.0
3,770,535	+	tsaA	LU632_RS19840	0.66	-0.3
3,770,535	+	tsaA	LU632_RS19840	0.66	-0.2
3,770,536	-	tsaA	LU632_RS19840	0.67	+1.2
3,770,536	-	tsaA	LU632_RS19840	0.67	-0.4
3,770,536	-	tsaA	LU632_RS19840	0.67	-1.3
3,770,536	-	tsaA	LU632_RS19840	0.67	+0.3
3,770,623	-	tsaA	LU632_RS19840	0.79	+1.2
3,770,659	+	tsaA	LU632_RS19840	0.84	+1.0
3,770,812	+				+1.4
3,770,812	+				-0.7
3,772,604	+				-1.3
3,772,605	-				-0.4
3,772,635	+				+0.3
3,772,636	-				+1.0
3,772,678	+				-1.0
3,772,706	+				-1.6
3,772,707	-				-0.6
3,772,816	+				+1.0
3,772,816	+				-0.3
3,772,816	+				+0.6
3,772,817	-				+0.1
3,772,817	-				+1.1
3,772,827	-				+0.6
3,773,197	-	arfB	LU632_RS19850	0.49	-0.5
3,773,316	+	arfB	LU632_RS19850	0.78	+0.0
3,773,320	-	arfB	LU632_RS19850	0.79	-0.1
3,773,445	+				-0.8
3,773,459	+				-1.6
3,773,597	+		LU632_RS19855	0.34	-0.3
3,773,598	-		LU632_RS19855	0.35	-0.5
3,773,598	-		LU632_RS19855	0.35	-0.3