Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18955

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
3,577,366	+				-0.6
3,577,464	+		LU632_RS18945	0.33	-0.9
3,577,465	-		LU632_RS18945	0.33	-0.1
3,577,465	-		LU632_RS18945	0.33	+1.2
3,577,555	-		LU632_RS18945	0.62	+0.7
3,577,561	-		LU632_RS18945	0.64	+2.1
3,577,566	-		LU632_RS18945	0.66	+0.7
3,577,571	+		LU632_RS18945	0.68	-0.5
3,577,572	-		LU632_RS18945	0.68	+0.1
3,577,697	+				-1.8
3,577,799	+		LU632_RS18950	0.30	+0.0
3,577,799	+		LU632_RS18950	0.30	-0.6
3,577,800	-		LU632_RS18950	0.31	+0.4
3,577,836	+		LU632_RS18950	0.41	+0.8
3,577,841	-		LU632_RS18950	0.43	+0.3
3,577,841	-		LU632_RS18950	0.43	+2.9
3,577,845	+		LU632_RS18950	0.44	+0.8
3,577,846	-		LU632_RS18950	0.44	+1.1
3,577,846	-		LU632_RS18950	0.44	-2.2
3,577,846	-		LU632_RS18950	0.44	+0.1
3,577,846	-		LU632_RS18950	0.44	+1.2
3,577,846	-		LU632_RS18950	0.44	+2.0
3,577,846	-		LU632_RS18950	0.44	-1.4
3,577,846	-		LU632_RS18950	0.44	-1.5
3,577,847	+		LU632_RS18950	0.45	+0.2
3,577,847	+		LU632_RS18950	0.45	-1.8
3,577,848	-		LU632_RS18950	0.45	-0.1
3,577,848	-		LU632_RS18950	0.45	-1.3
3,577,848	-		LU632_RS18950	0.45	-0.2
3,577,903	-		LU632_RS18950	0.61	-2.5
3,577,922	+		LU632_RS18950	0.67	-0.8
3,578,017	+				+5.1
3,578,031	+				+1.8
3,578,174	-				+0.8
3,578,258	-				-0.9
3,578,322	+				-0.2
3,578,327	-				-0.6
3,578,327	-				-0.7
3,578,336	+				-0.3
3,578,336	+				+0.6
3,578,336	+				+0.7
3,578,337	-				-1.1
3,578,340	-				-1.3
3,578,362	+				+1.0
3,578,388	+				+2.7
3,578,388	+				-0.3
3,578,388	+				+1.0
3,578,389	-				+0.7
3,578,389	-				+0.7
3,578,389	-				-0.2
3,578,389	-				+0.0
3,578,389	-				+0.1
3,578,603	-	rdgC	LU632_RS18955	0.26	+0.2
3,578,654	-	rdgC	LU632_RS18955	0.32	-0.6
3,578,765	-	rdgC	LU632_RS18955	0.44	-0.8
3,578,914	+	rdgC	LU632_RS18955	0.60	-0.5
3,578,915	-	rdgC	LU632_RS18955	0.61	-0.8
3,578,934	+	rdgC	LU632_RS18955	0.63	+0.3
3,579,095	+	rdgC	LU632_RS18955	0.80	-3.2
3,579,096	-	rdgC	LU632_RS18955	0.80	-1.5
3,579,096	-	rdgC	LU632_RS18955	0.80	+0.9
3,579,096	-	rdgC	LU632_RS18955	0.80	-1.1
3,579,133	+	rdgC	LU632_RS18955	0.84	-0.2
3,579,134	-	rdgC	LU632_RS18955	0.85	-0.6
3,579,158	-	rdgC	LU632_RS18955	0.87	+0.5
3,579,158	-	rdgC	LU632_RS18955	0.87	-0.5
3,579,239	-				-0.3
3,579,276	+				+0.3
3,579,276	+				+2.7
3,579,277	-				+0.4
3,579,313	+				+0.0
3,579,337	+				+0.7
3,579,385	-	ppnP	LU632_RS18960	0.25	+0.0
3,579,389	+	ppnP	LU632_RS18960	0.26	-0.5
3,579,389	+	ppnP	LU632_RS18960	0.26	-1.0
3,579,390	-	ppnP	LU632_RS18960	0.27	-1.0
3,579,393	+	ppnP	LU632_RS18960	0.28	-0.9
3,579,393	+	ppnP	LU632_RS18960	0.28	-1.0
3,579,410	-	ppnP	LU632_RS18960	0.34	-0.5
3,579,410	-	ppnP	LU632_RS18960	0.34	-1.3
3,579,499	+	ppnP	LU632_RS18960	0.64	+0.0
3,579,500	-	ppnP	LU632_RS18960	0.65	+0.9
3,579,608	+				-0.4
3,579,609	-				+0.5
3,579,614	+				-1.1
3,579,615	-				+2.3
3,579,615	-				-0.8
3,579,616	+				+2.5
3,579,617	-				-0.1
3,579,617	-				-1.8
3,579,633	+				-1.4
3,579,644	+				-2.0
3,579,672	+				-0.7
3,579,716	-				+1.0
3,579,738	+				+1.5
3,579,775	+				+1.0
3,579,776	-				+0.8
3,579,776	-				+0.5
3,579,794	+				-2.6
3,579,795	-				-1.5
3,579,796	+				-0.8
3,579,834	+		LU632_RS18965	0.12	+0.3
3,579,886	+		LU632_RS18965	0.18	-0.3
3,579,886	+		LU632_RS18965	0.18	+0.4
3,579,887	-		LU632_RS18965	0.18	+0.5
3,579,973	+		LU632_RS18965	0.29	-0.3
3,579,974	-		LU632_RS18965	0.29	-2.0
3,579,974	-		LU632_RS18965	0.29	-2.2
3,579,974	-		LU632_RS18965	0.29	-0.3
3,579,975	+		LU632_RS18965	0.29	+0.2
3,579,976	-		LU632_RS18965	0.29	-0.0
3,579,976	-		LU632_RS18965	0.29	-0.5
3,579,993	+		LU632_RS18965	0.31	-1.0
3,579,993	+		LU632_RS18965	0.31	-1.5
3,579,993	+		LU632_RS18965	0.31	+0.4
3,579,994	-		LU632_RS18965	0.31	+0.5
3,579,994	-		LU632_RS18965	0.31	-0.6
3,579,994	-		LU632_RS18965	0.31	+0.1
3,579,994	-		LU632_RS18965	0.31	-0.9
3,580,110	+		LU632_RS18965	0.45	-0.9
3,580,111	-		LU632_RS18965	0.45	-0.1
3,580,172	+		LU632_RS18965	0.53	+0.7