Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17965

Experiment: plant=Melon; plant sample=MP1; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17960 and LU632_RS17965 are separated by 34 nucleotidesLU632_RS17965 and LU632_RS17970 are separated by 113 nucleotidesLU632_RS17970 and purL are separated by 159 nucleotides LU632_RS17960: LU632_RS17960 - IS4 family transposase, at 3,388,790 to 3,390,133 _RS17960 LU632_RS17965: LU632_RS17965 - IS481 family transposase, at 3,390,168 to 3,391,208 _RS17965 LU632_RS17970: LU632_RS17970 - transposase domain-containing protein, at 3,391,322 to 3,391,465 _RS17970 LU632_RS17975: purL - phosphoribosylformylglycinamidine synthase, at 3,391,625 to 3,395,512 purL Position (kb) 3390 3391 3392Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3391.514 kb on + strandat 3391.514 kb on + strandat 3391.514 kb on + strandat 3391.514 kb on + strandat 3391.514 kb on + strandat 3391.558 kb on + strandat 3391.559 kb on - strandat 3391.601 kb on - strandat 3391.626 kb on + strandat 3391.658 kb on - strandat 3391.744 kb on + strandat 3391.744 kb on + strandat 3391.745 kb on - strandat 3391.840 kb on + strandat 3391.870 kb on + strandat 3392.173 kb on + strand, within purL

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA
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3,391,514 + +1.8
3,391,514 + +2.3
3,391,514 + -2.3
3,391,514 + +0.5
3,391,514 + +1.2
3,391,558 + -2.1
3,391,559 - +0.1
3,391,601 - +0.0
3,391,626 + +1.5
3,391,658 - -0.1
3,391,744 + -2.5
3,391,744 + -2.0
3,391,745 - -1.9
3,391,840 + -2.2
3,391,870 + -3.5
3,392,173 + purL LU632_RS17975 0.14 -1.7

Or see this region's nucleotide sequence