Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16255

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
3,076,637	+	nagA	LU632_RS16250	0.21	-0.8
3,076,638	-	nagA	LU632_RS16250	0.21	+0.2
3,076,638	-	nagA	LU632_RS16250	0.21	+0.5
3,076,641	-	nagA	LU632_RS16250	0.22	-1.2
3,076,808	+	nagA	LU632_RS16250	0.36	-0.8
3,077,046	+	nagA	LU632_RS16250	0.57	-1.0
3,077,046	+	nagA	LU632_RS16250	0.57	-1.2
3,077,047	-	nagA	LU632_RS16250	0.57	-1.2
3,077,047	-	nagA	LU632_RS16250	0.57	-1.1
3,077,048	+	nagA	LU632_RS16250	0.57	-0.4
3,077,049	-	nagA	LU632_RS16250	0.57	-1.2
3,077,054	+	nagA	LU632_RS16250	0.58	-1.4
3,077,143	+	nagA	LU632_RS16250	0.66	-0.2
3,077,143	+	nagA	LU632_RS16250	0.66	+2.6
3,077,436	-				-2.4
3,077,440	+				+0.6
3,077,441	-				+1.5
3,077,533	-				-0.3
3,077,533	-				-0.0
3,077,546	-				-0.1
3,077,581	-				+0.6
3,077,592	-				+0.8
3,077,698	-		LU632_RS16255	0.12	-0.1
3,077,717	+		LU632_RS16255	0.14	+1.4
3,077,720	+		LU632_RS16255	0.14	-0.3
3,077,720	+		LU632_RS16255	0.14	-0.7
3,077,720	+		LU632_RS16255	0.14	+0.5
3,077,787	+		LU632_RS16255	0.19	+1.5
3,077,788	-		LU632_RS16255	0.19	+0.5
3,077,815	-		LU632_RS16255	0.22	+0.2
3,077,815	-		LU632_RS16255	0.22	+0.4
3,077,815	-		LU632_RS16255	0.22	+0.4
3,077,893	+		LU632_RS16255	0.28	+1.6
3,077,894	-		LU632_RS16255	0.28	+1.5
3,077,981	+		LU632_RS16255	0.35	+1.8
3,077,991	-		LU632_RS16255	0.36	-1.2
3,077,991	-		LU632_RS16255	0.36	+0.1
3,078,009	-		LU632_RS16255	0.38	+0.4
3,078,012	-		LU632_RS16255	0.38	+0.4
3,078,049	+		LU632_RS16255	0.41	+1.0
3,078,051	+		LU632_RS16255	0.41	+0.6
3,078,052	-		LU632_RS16255	0.41	+5.3
3,078,052	-		LU632_RS16255	0.41	-0.4
3,078,135	+		LU632_RS16255	0.48	-2.3
3,078,136	-		LU632_RS16255	0.48	+4.5
3,078,195	+		LU632_RS16255	0.53	+1.2
3,078,195	+		LU632_RS16255	0.53	+0.1
3,078,196	-		LU632_RS16255	0.53	-0.2
3,078,196	-		LU632_RS16255	0.53	-1.4
3,078,203	+		LU632_RS16255	0.53	+0.1
3,078,234	+		LU632_RS16255	0.56	+2.3
3,078,235	-		LU632_RS16255	0.56	-0.7
3,078,235	-		LU632_RS16255	0.56	+2.3
3,078,235	-		LU632_RS16255	0.56	-0.4
3,078,236	+		LU632_RS16255	0.56	+0.8
3,078,237	-		LU632_RS16255	0.56	+2.1
3,078,265	-		LU632_RS16255	0.58	-1.6
3,078,276	-		LU632_RS16255	0.59	+1.0
3,078,370	-		LU632_RS16255	0.67	+2.2
3,078,454	-		LU632_RS16255	0.74	-0.5
3,078,499	+		LU632_RS16255	0.78	+0.2
3,078,499	+		LU632_RS16255	0.78	+1.4
3,078,499	+		LU632_RS16255	0.78	+1.4
3,078,500	-		LU632_RS16255	0.78	+2.1
3,078,500	-		LU632_RS16255	0.78	+0.1
3,078,500	-		LU632_RS16255	0.78	+0.2
3,078,515	+		LU632_RS16255	0.79	-1.1
3,078,516	-		LU632_RS16255	0.79	+0.4
3,078,516	-		LU632_RS16255	0.79	+1.3
3,078,520	-		LU632_RS16255	0.79	+0.9
3,078,624	+		LU632_RS16255	0.88	+1.1
3,078,624	+		LU632_RS16255	0.88	+0.9
3,078,624	+		LU632_RS16255	0.88	-1.4
3,078,625	-		LU632_RS16255	0.88	+2.0
3,078,802	-				-0.4
3,078,893	-		LU632_RS16260	0.12	+0.6
3,078,895	+		LU632_RS16260	0.12	+1.5
3,078,932	+		LU632_RS16260	0.17	-0.3
3,078,933	-		LU632_RS16260	0.17	+0.7
3,078,933	-		LU632_RS16260	0.17	+0.8
3,079,007	+		LU632_RS16260	0.27	+0.2
3,079,100	+		LU632_RS16260	0.39	-0.9
3,079,100	+		LU632_RS16260	0.39	+0.3
3,079,100	+		LU632_RS16260	0.39	+1.1
3,079,101	-		LU632_RS16260	0.40	+0.6
3,079,101	-		LU632_RS16260	0.40	+0.2
3,079,101	-		LU632_RS16260	0.40	+2.4
3,079,114	+		LU632_RS16260	0.41	-0.1
3,079,115	-		LU632_RS16260	0.41	+0.3
3,079,130	-		LU632_RS16260	0.43	-0.1
3,079,167	-		LU632_RS16260	0.48	-3.4
3,079,168	+		LU632_RS16260	0.48	-0.6
3,079,186	+		LU632_RS16260	0.51	-0.6
3,079,186	+		LU632_RS16260	0.51	+0.1
3,079,240	+		LU632_RS16260	0.58	-1.8
3,079,319	+		LU632_RS16260	0.69	+1.4
3,079,477	+		LU632_RS16260	0.90	-1.1
3,079,692	+				+1.5