Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15025

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
2,852,192	+		LU632_RS15010	0.30	-0.2
2,852,192	+		LU632_RS15010	0.30	+1.3
2,852,365	-		LU632_RS15010	0.81	-1.2
2,852,365	-		LU632_RS15010	0.81	+0.5
2,852,431	+				+1.5
2,852,445	-				+0.1
2,852,453	+				+0.4
2,852,470	+				+0.1
2,852,471	-				-0.8
2,852,578	-		LU632_RS15015	0.32	+0.3
2,852,602	+		LU632_RS15015	0.37	+0.3
2,852,633	-		LU632_RS15015	0.44	-0.3
2,852,765	+		LU632_RS15015	0.72	-1.9
2,852,765	+		LU632_RS15015	0.72	-0.3
2,852,766	-		LU632_RS15015	0.72	-0.0
2,852,766	-		LU632_RS15015	0.72	+0.0
2,852,769	+		LU632_RS15015	0.73	-0.3
2,852,770	-		LU632_RS15015	0.73	+0.5
2,852,841	-		LU632_RS15015	0.88	+0.1
2,852,942	+		LU632_RS15020	0.17	-1.5
2,852,942	+		LU632_RS15020	0.17	-1.1
2,852,943	-		LU632_RS15020	0.17	+2.4
2,852,971	-		LU632_RS15020	0.26	-2.4
2,853,094	+		LU632_RS15020	0.67	+0.3
2,853,157	+		LU632_RS15020	0.87	+0.1
2,853,157	+		LU632_RS15020	0.87	+2.0
2,853,158	-		LU632_RS15020	0.88	+1.0
2,853,162	-		LU632_RS15020	0.89	+1.3
2,853,217	+				-0.6
2,853,218	-				+0.9
2,853,452	-		LU632_RS15025	0.49	-1.5
2,853,466	+		LU632_RS15025	0.51	-0.6
2,853,545	+		LU632_RS15025	0.66	-1.9
2,853,549	-		LU632_RS15025	0.67	-1.5
2,853,629	+		LU632_RS15025	0.82	-1.2
2,853,850	+				+1.7
2,853,872	+				-1.3
2,853,877	-				+0.5
2,853,994	-				+1.1
2,854,046	-				-0.0
2,854,328	-		LU632_RS15030	0.43	+0.3
2,854,449	-		LU632_RS15030	0.59	-1.4
2,854,449	-		LU632_RS15030	0.59	-0.9
2,854,541	+		LU632_RS15030	0.72	-0.8
2,854,571	-		LU632_RS15030	0.76	+0.3
2,854,594	+		LU632_RS15030	0.79	-0.2
2,854,595	-		LU632_RS15030	0.79	+1.6
2,854,598	+		LU632_RS15030	0.79	-0.7
2,854,599	-		LU632_RS15030	0.79	+3.0
2,854,631	+		LU632_RS15030	0.84	-1.1
2,854,649	+		LU632_RS15030	0.86	+0.7
2,854,697	+				+0.5
2,854,697	+				+2.6
2,854,697	+				+1.3
2,854,697	+				-0.8
2,854,698	-				+0.8