Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14640

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
2,783,486	+				+0.7
2,783,486	+				+1.6
2,783,486	+				+1.7
2,783,487	-				-0.1
2,783,487	-				+1.4
2,783,488	+				+3.5
2,783,488	+				-0.6
2,783,488	+				-0.3
2,783,488	+				+0.7
2,783,488	+				-0.3
2,783,488	+				+3.7
2,783,488	+				+0.3
2,783,488	+				-1.0
2,783,489	-				+2.0
2,783,489	-				-1.1
2,783,489	-				-1.3
2,783,489	-				-0.1
2,783,490	+				-2.6
2,783,490	+				-0.2
2,783,490	+				-0.3
2,783,490	+				+0.7
2,783,490	+				-0.4
2,783,490	+				+1.3
2,783,490	+				+0.2
2,783,490	+				-0.5
2,783,634	+		LU632_RS14635	0.13	-1.0
2,783,699	+		LU632_RS14635	0.21	+1.0
2,783,699	+		LU632_RS14635	0.21	-0.1
2,783,700	-		LU632_RS14635	0.21	-0.2
2,783,701	+		LU632_RS14635	0.21	-0.1
2,783,701	+		LU632_RS14635	0.21	-1.6
2,783,702	-		LU632_RS14635	0.21	-1.0
2,784,036	+		LU632_RS14635	0.60	+1.3
2,784,036	+		LU632_RS14635	0.60	+1.3
2,784,036	+		LU632_RS14635	0.60	+1.8
2,784,037	-		LU632_RS14635	0.60	+1.6
2,784,041	-		LU632_RS14635	0.60	-2.0
2,784,117	+		LU632_RS14635	0.69	-1.3
2,784,117	+		LU632_RS14635	0.69	-1.0
2,784,117	+		LU632_RS14635	0.69	-0.1
2,784,117	+		LU632_RS14635	0.69	-0.1
2,784,283	-		LU632_RS14635	0.88	-0.2
2,784,346	+				-0.8
2,784,347	-				-2.4
2,784,416	+				-0.5
2,784,416	+				+0.3
2,784,416	+				-0.0
2,784,416	+				+1.3
2,784,434	+				+1.9
2,784,435	-				-2.0
2,784,435	-				+1.3
2,784,558	-	cobB	LU632_RS14640	0.15	+0.5
2,784,825	+	cobB	LU632_RS14640	0.47	+1.1
2,784,825	+	cobB	LU632_RS14640	0.47	-1.7
2,784,825	+	cobB	LU632_RS14640	0.47	+0.3
2,784,825	+	cobB	LU632_RS14640	0.47	+0.3
2,784,826	-	cobB	LU632_RS14640	0.47	-0.9
2,784,826	-	cobB	LU632_RS14640	0.47	+0.3
2,784,965	-	cobB	LU632_RS14640	0.64	+0.3
2,785,269	+				-1.4
2,785,269	+				-1.0
2,785,278	+				-0.3