Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14425

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
2,748,874	+		LU632_RS14415	0.24	+0.3
2,748,875	-		LU632_RS14415	0.24	+1.0
2,749,093	+		LU632_RS14415	0.65	+0.3
2,749,238	+				+0.2
2,749,239	-				-1.0
2,749,239	-				-0.3
2,749,329	+		LU632_RS14420	0.11	+1.7
2,749,533	+		LU632_RS14420	0.61	-1.3
2,749,600	+		LU632_RS14420	0.77	-0.6
2,749,601	-		LU632_RS14420	0.77	+0.1
2,749,606	+		LU632_RS14420	0.78	-0.9
2,749,606	+		LU632_RS14420	0.78	-0.2
2,749,607	-		LU632_RS14420	0.79	-1.1
2,749,622	+		LU632_RS14420	0.82	-0.3
2,749,695	+				-0.7
2,749,696	-				+2.6
2,749,696	-				+0.6
2,749,827	-		LU632_RS14425	0.41	-1.6
2,749,827	-		LU632_RS14425	0.41	-0.7
2,749,835	-		LU632_RS14425	0.44	+1.1
2,749,889	+		LU632_RS14425	0.60	+0.7
2,749,889	+		LU632_RS14425	0.60	-1.2
2,749,890	-		LU632_RS14425	0.60	-1.6
2,749,971	-		LU632_RS14425	0.84	-0.6
2,750,092	+				+0.6
2,750,100	+				-0.2
2,750,100	+				-2.7
2,750,101	-				+1.3
2,750,101	-				-2.0
2,750,337	-		LU632_RS14430	0.13	-0.1
2,750,384	-		LU632_RS14430	0.17	-0.7
2,750,435	-		LU632_RS14430	0.22	+0.9
2,750,444	+		LU632_RS14430	0.23	-0.6
2,750,445	-		LU632_RS14430	0.23	+0.3
2,750,499	+		LU632_RS14430	0.28	+1.3
2,750,500	-		LU632_RS14430	0.28	-0.6
2,750,500	-		LU632_RS14430	0.28	+0.2
2,750,525	-		LU632_RS14430	0.31	-0.2
2,750,541	+		LU632_RS14430	0.32	+0.2
2,750,542	-		LU632_RS14430	0.32	-1.6
2,750,542	-		LU632_RS14430	0.32	-2.7
2,750,760	+		LU632_RS14430	0.53	+3.2
2,750,761	-		LU632_RS14430	0.53	-0.6
2,750,848	-		LU632_RS14430	0.61	-0.5
2,751,021	+		LU632_RS14430	0.78	-1.9
2,751,021	+		LU632_RS14430	0.78	-2.7
2,751,022	-		LU632_RS14430	0.78	-0.7
2,751,022	-		LU632_RS14430	0.78	-1.9