Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11720

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
2,229,730	-				+0.8
2,229,866	-				-2.2
2,229,949	+				+2.5
2,230,024	+				-0.1
2,230,024	+				+1.0
2,230,024	+				-0.4
2,230,029	+				-1.5
2,230,030	-				-1.0
2,230,032	+				-0.9
2,230,064	+				-2.0
2,230,111	-				-0.5
2,230,128	+				-1.1
2,230,128	+				+2.0
2,230,150	+				-1.1
2,230,151	-				-1.9
2,230,231	-				-0.5
2,230,257	+				+1.8
2,230,258	-				+0.5
2,230,293	-	ydfG	LU632_RS11720	0.15	-0.5
2,230,378	-	ydfG	LU632_RS11720	0.26	-1.9
2,230,401	+	ydfG	LU632_RS11720	0.29	-3.0
2,230,500	+	ydfG	LU632_RS11720	0.42	-0.2
2,230,573	-	ydfG	LU632_RS11720	0.52	-1.5
2,230,604	-	ydfG	LU632_RS11720	0.56	-2.5
2,230,668	+	ydfG	LU632_RS11720	0.64	+0.1
2,230,684	-	ydfG	LU632_RS11720	0.67	-2.3
2,230,764	+	ydfG	LU632_RS11720	0.77	-0.1
2,230,818	+	ydfG	LU632_RS11720	0.84	-1.5
2,230,818	+	ydfG	LU632_RS11720	0.84	-0.5
2,230,842	+	ydfG	LU632_RS11720	0.88	+0.3
2,230,920	+				+1.0
2,230,920	+				-0.9
2,230,921	-				-2.6
2,230,933	+				+0.4
2,230,991	-				+0.6
2,231,003	+				-0.2
2,231,004	-				-0.9
2,231,055	+				-0.5
2,231,056	-				-0.5
2,231,081	-				-0.2
2,231,130	-		LU632_RS11725	0.14	+0.1
2,231,180	-		LU632_RS11725	0.19	-1.3
2,231,312	+		LU632_RS11725	0.32	-2.2
2,231,312	+		LU632_RS11725	0.32	+1.6
2,231,312	+		LU632_RS11725	0.32	+0.6
2,231,313	-		LU632_RS11725	0.32	+0.6
2,231,337	-		LU632_RS11725	0.35	+0.1
2,231,337	-		LU632_RS11725	0.35	-2.2
2,231,374	+		LU632_RS11725	0.39	-0.9
2,231,375	-		LU632_RS11725	0.39	-0.2
2,231,376	+		LU632_RS11725	0.39	+0.1
2,231,376	+		LU632_RS11725	0.39	-0.9
2,231,377	-		LU632_RS11725	0.39	-0.4
2,231,477	+		LU632_RS11725	0.49	-0.0
2,231,702	+		LU632_RS11725	0.72	-0.6
2,231,702	+		LU632_RS11725	0.72	-0.4
2,231,786	-		LU632_RS11725	0.81	-1.6
2,231,866	+		LU632_RS11725	0.89	-0.1
2,231,888	-				-0.9